Ancient Recombination Events between Human Herpes Simplex Viruses

Pleistocene Mitochondrial Genomes Suggest a Single Major Dispersal of Non-Africans and a Late Glacial Population Turnover in Europe

(2016) Cosimo Posth et al.   CURRENT BIOLOGY

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Enhanced virome sequencing using targeted sequence capture

(2015) Todd N. Wylie et al.   GENOME RESEARCH

Genetic Diversity within Alphaherpesviruses: Characterization of a Novel Variant of Herpes Simplex Virus 2

(2015) Sonia Burrel et al.   JOURNAL OF VIROLOGY

Genomic, Phylogenetic, and Recombinational Characterization of Herpes Simplex Virus 2 Strains

(2015) Aaron W. Kolb et al.   JOURNAL OF VIROLOGY

Genome Sequencing and Analysis of Geographically Diverse Clinical Isolates of Herpes Simplex Virus 2

(2015) Ruchi M. Newman et al.   JOURNAL OF VIROLOGY

Global Estimates of Prevalent and Incident Herpes Simplex Virus Type 2 Infections in 2012

(2015) Katharine J. Looker et al.   PLoS One

Global and Regional Estimates of Prevalent and Incident Herpes Simplex Virus Type 1 Infections in 2012

(2015) Katharine J. Looker et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Evolutionary Origins of Human Herpes Simplex Viruses 1 and 2

(2014) Joel O. Wertheim et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome sequence of a chimpanzee herpesvirus and its relation to other primate alphaherpesviruses

(2013) Alberto Severini et al.   ARCHIVES OF VIROLOGY

Detection of a new variant of herpes simplex virus type 2 among HIV-1-infected individuals

(2013) Sonia Burrel et al.   JOURNAL OF CLINICAL VIROLOGY

Evolution and Diversity in Human Herpes Simplex Virus Genomes

(2013) M. L. Szpara et al.   JOURNAL OF VIROLOGY

Using HSV-1 Genome Phylogenetics to Track Past Human Migrations

(2013) Aaron W. Kolb et al.   PLoS One

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

A Potentially Fatal Mix of Herpes in Zoos

(2012) Alex D. Greenwood et al.   CURRENT BIOLOGY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Genotypic Characterization of UL23 Thymidine Kinase and UL30 DNA Polymerase of Clinical Isolates of Herpes Simplex Virus: Natural Polymorphism and Mutations Associated with Resistance to Antivirals

(2010) S. Burrel et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION