Diverse Cis-Regulatory Mechanisms Contribute to Expression Evolution of Tandem Gene Duplicates

Genetic and Transgenic Reagents for Drosophila simulans , D. mauritiana , D. yakuba , D. santomea , and D. virilis

(2017) David L. Stern et al.   G3-Genes Genomes Genetics

Tandem duplications lead to novel expression patterns through exon shuffling in Drosophila yakuba

(2017) Rebekah L. Rogers et al.   PLoS Genetics

Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution

(2016) Hannah K. Long et al.   CELL

Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks

(2016) Enrico Cannavò et al.   CURRENT BIOLOGY

Natural courtship song variation caused by an intronic retroelement in an ion channel gene

(2016) Yun Ding et al.   NATURE

Expression of tandem gene duplicates is often greater than twofold

(2016) David W. Loehlin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coregulation of tandem duplicate genes slows evolution of subfunctionalization in mammals

(2016) X. Lan et al.   SCIENCE

Favorable genomic environments for cis-regulatory evolution: A novel theoretical framework

(2016) Ignacio Maeso et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Krüppel Expression Levels Are Maintained through Compensatory Evolution of Shadow Enhancers

(2016) Zeba Wunderlich et al.   Cell Reports

cis-regulatory analysis of the Drosophila pdm locus reveals a diversity of neural enhancers

(2015) Jermaine Ross et al.   BMC GENOMICS

Compensatory Drift and the Evolutionary Dynamics of Dosage-Sensitive Duplicate Genes

(2015) A. Thompson et al.   GENETICS

Multispecies Analysis of Expression Pattern Diversification in the Recently Expanded Insect Ly6 Gene Family

(2015) Kohtaro Tanaka et al.   MOLECULAR BIOLOGY AND EVOLUTION

Maintenance and Loss of Duplicated Genes by Dosage Subfunctionalization

(2015) Jean-Francois Gout et al.   MOLECULAR BIOLOGY AND EVOLUTION

Analysis of the expression patterns, subcellular localisations and interaction partners of Drosophila proteins using a pigP protein trap library

(2014) N. Lowe et al.   DEVELOPMENT

Co-regulation of invected and engrailed by a complex array of regulatory sequences in Drosophila

(2014) Yuzhong Cheng et al.   DEVELOPMENTAL BIOLOGY

Highly Specific and Efficient CRISPR/Cas9-Catalyzed Homology-Directed Repair inDrosophila

(2014) Scott J. Gratz et al.   GENETICS

Genome-scale functional characterization of Drosophila developmental enhancers in vivo

(2014) Evgeny Z. Kvon et al.   NATURE

Quantitative genome-wide enhancer activity maps for five Drosophila species show functional enhancer conservation and turnover during cis-regulatory evolution

(2014) Cosmas D Arnold et al.   NATURE GENETICS

Pervasive Divergence of Transcriptional Gene Regulation in Caenorhabditis Nematodes

(2014) Antoine Barrière et al.   PLoS Genetics

To the beat of a different drum: determinants implicated in the asymmetric sequence divergence of Caenorhabditis elegans paralogs

(2013) Vaishali Katju   BMC EVOLUTIONARY BIOLOGY

Genome Engineering of Drosophila with the CRISPR RNA-Guided Cas9 Nuclease

(2013) Scott J. Gratz et al.   GENETICS

Accelerated Evolution after Gene Duplication: A Time-Dependent Process Affecting Just One Copy

(2013) Cinta Pegueroles et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Neofunctionalization of young duplicate genes in Drosophila

(2013) R. Assis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Emergence and Diversification of Fly Pigmentation Through Evolution of a Gene Regulatory Module

(2013) L. Arnoult et al.   SCIENCE

Retroactive Maintains Cuticle Integrity by Promoting the Trafficking of Knickkopf into the Procuticle of Tribolium castaneum

(2013) Sujata S. Chaudhari et al.   PLoS Genetics

The Ly6 neurotoxin-like molecule target of wit regulates spontaneous neurotransmitter release at the developing neuromuscular junction inDrosophila

(2012) Nam Chul Kim et al.   Developmental Neurobiology

Estimating Divergence Dates and Substitution Rates in the Drosophila Phylogeny

(2012) Darren J. Obbard et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Morphological evolution caused by many subtle-effect substitutions in regulatory DNA

(2011) Nicolás Frankel et al.   NATURE

Gene amplification and insecticide resistance

(2011) Chris Bass et al.   PEST MANAGEMENT SCIENCE

Evolutionary origin of a novel gene expression pattern through co-option of the latent activities of existing regulatory sequences

(2011) M. Rebeiz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Crooked, Coiled and Crimpled are three Ly6-like proteins required for proper localization of septate junction components

(2010) A. Nilton et al.   DEVELOPMENT

Refinement of Tools for Targeted Gene Expression in Drosophila

(2010) B. D. Pfeiffer et al.   GENETICS

Phenotypic robustness conferred by apparently redundant transcriptional enhancers

(2010) Nicolás Frankel et al.   NATURE

Gene copy-number polymorphism in nature

(2010) D. R. Schrider et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Maintenance of duplicate genes and their functional redundancy by reduced expression

(2010) Wenfeng Qian et al.   TRENDS IN GENETICS

Nomadic Enhancers: Tissue-Specific cis-Regulatory Elements of yellow Have Divergent Genomic Positions among Drosophila Species

(2010) Gizem Kalay et al.   PLoS Genetics

A Single Enhancer Regulating the Differential Expression of Duplicated Red-Sensitive Opsin Genes in Zebrafish

(2010) Taro Tsujimura et al.   PLoS Genetics

boudin is required for septate junction organisation in Drosophila and codes for a diffusible protein of the Ly6 superfamily

(2009) A. Hijazi et al.   DEVELOPMENT

Evolution of gene function and regulatory control after whole-genome duplication: Comparative analyses in vertebrates

(2009) K. S. Kassahn et al.   GENOME RESEARCH

Distinguishing Among Evolutionary Models for the Maintenance of Gene Duplicates

(2009) M. W. Hahn   JOURNAL OF HEREDITY

SLEEPLESS, a Ly-6/neurotoxin family member, regulates the levels, localization and activity of Shaker

(2009) Mark N Wu et al.   NATURE NEUROSCIENCE

Functional resolution of duplicated hoxb5 genes in teleosts

(2008) O. Jarinova et al.   DEVELOPMENT

Conserved structural determinants in three-fingered protein domains

(2008) Andrzej Galat et al.   FEBS Journal

Global transcriptional regulation of the locus encoding the skeletal muscle determination genes Mrf4 and Myf5

(2008) J. J. Carvajal et al.   GENES & DEVELOPMENT

Subfunctionalization of Duplicated Zebrafish pax6 Genes by cis-Regulatory Divergence

(2008) Dirk A. Kleinjan et al.   PLoS Genetics