Accelerated Evolution after Gene Duplication: A Time-Dependent Process Affecting Just One Copy

Very Low Rate of Gene Conversion in the Yeast Genome

(2012) Claudio Casola et al.   MOLECULAR BIOLOGY AND EVOLUTION

Real-Time Evolution of New Genes by Innovation, Amplification, and Divergence

(2012) J. Nasvall et al.   SCIENCE

Resolving the Ortholog Conjecture: Orthologs Tend to Be Weakly, but Significantly, More Similar in Function than Paralogs

(2012) Adrian M. Altenhoff et al.   PLoS Computational Biology

Evidence for short-time divergence and long-time conservation of tissue-specific expression after gene duplication

(2011) J. Huerta-Cepas et al.   BRIEFINGS IN BIOINFORMATICS

Toward a General Model for the Evolutionary Dynamics of Gene Duplicates

(2011) Anke Konrad et al.   Genome Biology and Evolution

Sequence shortening in the rodent ancestor

(2011) S. Laurie et al.   GENOME RESEARCH

The evolution of gene expression levels in mammalian organs

(2011) David Brawand et al.   NATURE

Ensembl 2012

(2011) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

Asymmetric and non-uniform evolution of recently duplicated human genes

(2010) Alexander Y Panchin et al.   Biology Direct

Retrotransposition and mutation events yield Rap1 GTPases with differential signalling capacity

(2010) Tomasz Zemojtel et al.   BMC EVOLUTIONARY BIOLOGY

Mutational dynamics of murine angiogenin duplicates

(2010) Francisco M Codoñer et al.   BMC EVOLUTIONARY BIOLOGY

Lineage-Specific Variation in Intensity of Natural Selection in Mammals

(2010) M. Toll-Riera et al.   MOLECULAR BIOLOGY AND EVOLUTION

Statistical Properties of the Branch-Site Test of Positive Selection

(2010) Z. Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolution of gene duplications: classifying and distinguishing between models

(2010) Hideki Innan et al.   NATURE REVIEWS GENETICS

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling

(2010) Ignacio Medina et al.   NUCLEIC ACIDS RESEARCH

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Gene Conversion and Evolution of Gene Families: An Overview

(2010) Tomoko Ohta   Genes

Adaptive evolution of young gene duplicates in mammals

(2009) M. V. Han et al.   GENOME RESEARCH

Duplication Mechanism and Disruptions in Flanking Regions Determine the Fate of Mammalian Gene Duplicates

(2009) Jin Jun et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Distinguishing Among Evolutionary Models for the Maintenance of Gene Duplicates

(2009) M. W. Hahn   JOURNAL OF HEREDITY

Heterogeneous Patterns of Gene-Expression Diversification in Mammalian Gene Duplicates

(2009) D. Farre et al.   MOLECULAR BIOLOGY AND EVOLUTION

BioMart Central Portal—unified access to biological data

(2009) Syed Haider et al.   NUCLEIC ACIDS RESEARCH

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

(2008) A. J. Vilella et al.   GENOME RESEARCH

Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes

(2008) Dacheng Tian et al.   NATURE

Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis

(2008) A. Loytynoja et al.   SCIENCE