Mutational Biases Influence Parallel Adaptation

What drives parallel evolution?

(2016) Susan F. Bailey et al.   BIOESSAYS

The properties of spontaneous mutations in the opportunistic pathogen Pseudomonas aeruginosa

(2016) Jeremy R. Dettman et al.   BMC GENOMICS

Phylogenetic incongruence and the evolutionary origins of cardenolide-resistant forms of Na+,K+-ATPase inDanausbutterflies

(2016) Matthew L. Aardema et al.   EVOLUTION

Direct estimate of the rate of germline mutation in a bird

(2016) Linnéa Smeds et al.   GENOME RESEARCH

Causes of molecular convergence and parallelism in protein evolution

(2016) Jay F. Storz   NATURE REVIEWS GENETICS

Predictable convergence in hemoglobin function has unpredictable molecular underpinnings

(2016) Chandrasekhar Natarajan et al.   SCIENCE

Gene Tree Discordance Causes Apparent Substitution Rate Variation

(2016) Fábio K. Mendes et al.   SYSTEMATIC BIOLOGY

The Rate and Spectrum of Spontaneous Mutations in Mycobacterium smegmatis , a Bacterium Naturally Devoid of the Postreplicative Mismatch Repair Pathway

(2016) Sibel Kucukyildirim et al.   G3-Genes Genomes Genetics

The Role of Standing Variation in Geographic Convergent Adaptation

(2015) Peter L. Ralph et al.   AMERICAN NATURALIST

How reticulated are species?

(2015) James Mallet et al.   BIOESSAYS

The Spontaneous Mutation Rate in the Fission YeastSchizosaccharomyces pombe

(2015) Ashley Farlow et al.   GENETICS

On the Causes of Evolutionary Transition:Transversion Bias

(2015) Arlin Stoltzfus et al.   MOLECULAR BIOLOGY AND EVOLUTION

No Genome-Wide Protein Sequence Convergence for Echolocation

(2015) Z. Zou et al.   MOLECULAR BIOLOGY AND EVOLUTION

Determining the Null Model for Detecting Adaptive Convergence from Genomic Data: A Case Study using Echolocating Mammals

(2015) G. W. C. Thomas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Are Convergent and Parallel Amino Acid Substitutions in Protein Evolution More Prevalent Than Neutral Expectations?

(2015) Zhengting Zou et al.   MOLECULAR BIOLOGY AND EVOLUTION

Elucidating the molecular architecture of adaptation via evolve and resequence experiments

(2015) Anthony Long et al.   NATURE REVIEWS GENETICS

Determinants of spontaneous mutation in the bacteriumEscherichia colias revealed by whole-genome sequencing

(2015) Patricia L. Foster et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mutation-biased adaptation in Andean house wrens

(2015) Arlin Stoltzfus et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Contribution of a mutational hot spot to hemoglobin adaptation in high-altitude Andean house wrens

(2015) Spencer C. Galen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Widespread convergence in toxin resistance by predictable molecular evolution

(2015) Beata Ujvari et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bypass of genetic constraints during mutator evolution to antibiotic resistance

(2015) A. Couce et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genome-Wide Estimates of Mutation Rates and Spectrum in Schizosaccharomyces pombe Indicate CpG Sites are Highly Mutagenic Despite the Absence of DNA Methylation

(2015) Megan G. Behringer et al.   G3-Genes Genomes Genetics

Convergent Evolution of Hemoglobin Function in High-Altitude Andean Waterfowl Involves Limited Parallelism at the Molecular Sequence Level

(2015) Chandrasekhar Natarajan et al.   PLoS Genetics

The Spontaneous Mutation Rate in the Fission YeastSchizosaccharomyces pombe

(2015) Ashley Farlow et al.   GENETICS

Parallel Sites Implicate Functional Convergence of the Hearing Gene Prestin among Echolocating Mammals

(2014) Zhen Liu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Precise estimates of mutation rate and spectrum in yeast

(2014) Y. O. Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Modeling Evolution Using the Probability of Fixation: History and Implications

(2014) David M. McCandlish et al.   QUARTERLY REVIEW OF BIOLOGY

The genetic causes of convergent evolution

(2013) David L. Stern   NATURE REVIEWS GENETICS

Repeated elevational transitions in hemoglobin function during the evolution of Andean hummingbirds

(2013) J. Projecto-Garcia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Constructive neutral evolution: exploring evolutionary theory’s curious disconnect

(2012) Arlin Stoltzfus   Biology Direct

Extraordinary genome stability in the ciliate Paramecium tetraurelia

(2012) W. Sung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Constraint shapes convergence in tetrodotoxin-resistant sodium channels of snakes

(2012) C. R. Feldman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The probability of genetic parallelism and convergence in natural populations

(2012) G. L. Conte et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Parallel Molecular Evolution in an Herbivore Community

(2012) Y. Zhen et al.   SCIENCE

Repeatability and Contingency in the Evolution of a Key Innovation in Phage Lambda

(2012) J. R. Meyer et al.   SCIENCE

The evolution of cardenolide-resistant forms of Na+,K+-ATPase in Danainae butterflies

(2011) MATTHEW L. AARDEMA et al.   MOLECULAR ECOLOGY

POPULATION GENETICS, PLEIOTROPY, AND THE PREFERENTIAL FIXATION OF MUTATIONS DURING ADAPTIVE EVOLUTION

(2010) Matthew A. Streisfeld et al.   EVOLUTION

FISHER'S MODEL AND THE GENOMICS OF ADAPTATION: RESTRICTED PLEIOTROPY, HETEROGENOUS MUTATION, AND PARALLEL EVOLUTION

(2010) Luis-Miguel Chevin et al.   EVOLUTION

Diminishing Returns From Beneficial Mutations and Pervasive Epistasis Shape the Fitness Landscape for Rifampicin Resistance in Pseudomonas aeruginosa

(2010) R. C. MacLean et al.   GENETICS

The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana

(2010) S. Ossowski et al.   SCIENCE

Causes and evolutionary significance of genetic convergence

(2010) Pascal-Antoine Christin et al.   TRENDS IN GENETICS

The causes of repeated genetic evolution

(2009) Nicolas Gompel et al.   DEVELOPMENTAL BIOLOGY

Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines

(2009) P. D. Keightley et al.   GENOME RESEARCH

Climbing Mount Probable: Mutation as a Cause of Nonrandomness in Evolution

(2009) A. Stoltzfus et al.   JOURNAL OF HEREDITY

Adaptive Evolution of Digestive RNASE1 Genes in Leaf-Eating Monkeys Revisited: New Insights from Ten Additional Colobines

(2009) Li Yu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Parallel evolution in the major haemoglobin genes of eight species of Andean waterfowl

(2009) K. G. McCRACKEN et al.   MOLECULAR ECOLOGY

Is Genetic Evolution Predictable?

(2009) D. L. Stern et al.   SCIENCE

Toxin-Resistant Sodium Channels: Parallel Adaptive Evolution across a Complete Gene Family

(2008) M. C. Jost et al.   MOLECULAR BIOLOGY AND EVOLUTION

Convergence and parallelism reconsidered: what have we learned about the genetics of adaptation?

(2007) J ARENDT et al.   TRENDS IN ECOLOGY & EVOLUTION