Bad Clade Deletion Supertrees: A Fast and Accurate Supertree Algorithm

Fast and accurate branch lengths estimation for phylogenomic trees

(2016) Manuel Binet et al.   BMC BIOINFORMATICS

Collecting reliable clades using the Greedy Strict Consensus Merger

(2016) Markus Fleischauer et al.   PeerJ

ASTRAL: genome-scale coalescent-based species tree estimation

(2014) S. Mirarab et al.   BIOINFORMATICS

Supertrees Based on the Subtree Prune-and-Regraft Distance

(2014) Christopher Whidden et al.   SYSTEMATIC BIOLOGY

Phylogenetic relationships and character evolution analysis of Saxifragales using a supermatrix approach

(2013) D. E. Soltis et al.   AMERICAN JOURNAL OF BOTANY

Making automated multiple alignments of very large numbers of protein sequences

(2013) Fabian Sievers et al.   BIOINFORMATICS

The bee tree of life: a supermatrix approach to apoid phylogeny and biogeography

(2013) Shannon M Hedtke et al.   BMC EVOLUTIONARY BIOLOGY

FlipCut Supertrees: Towards Matrix Representation Accuracy in Polynomial Time

(2012) Malte Brinkmeyer et al.   ALGORITHMICA

MRL and SuperFine+MRL: new supertree methods

(2012) Nam Nguyen et al.   Algorithms for Molecular Biology

DACTAL: divide-and-conquer trees (almost) without alignments

(2012) S. Nelesen et al.   BIOINFORMATICS

The Complexity of Inferring a Minimally Resolved Phylogenetic Supertree

(2012) Jesper Jansson et al.   SIAM JOURNAL ON COMPUTING

Amalgamating Source Trees with Different Taxonomic Levels

(2012) Vincent Berry et al.   SYSTEMATIC BIOLOGY

Accuracy of phylogeny reconstruction methods combining overlapping gene data sets

(2011) Anne Kupczok et al.   Algorithms for Molecular Biology

An experimental study of Quartets MaxCut and other supertree methods

(2011) M Shel Swenson et al.   Algorithms for Molecular Biology

Conservative Supertrees

(2011) F. R. McMorris et al.   SYSTEMATIC BIOLOGY

Estimating Species Trees from Unrooted Gene Trees

(2011) Liang Liu et al.   SYSTEMATIC BIOLOGY

SuperFine: Fast and Accurate Supertree Estimation

(2011) M. Shel Swenson et al.   SYSTEMATIC BIOLOGY

A simulation study comparing supertree and combined analysis methods using SMIDGen

(2010) M Shel Swenson et al.   Algorithms for Molecular Biology

Robinson-Foulds Supertrees

(2010) Mukul S Bansal et al.   Algorithms for Molecular Biology

SUPERTRIPLETS: a triplet-based supertree approach to phylogenomics

(2010) V. Ranwez et al.   BIOINFORMATICS

BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis

(2010) Bret R. Larget et al.   BIOINFORMATICS

A maximum pseudo-likelihood approach for estimating species trees under the coalescent model

(2010) Liang Liu et al.   BMC EVOLUTIONARY BIOLOGY

Estimating Species Phylogenies Using Coalescence Times among Sequences

(2009) Liang Liu et al.   SYSTEMATIC BIOLOGY

PhySIC_IST: cleaning source trees to infer more informative supertrees

(2008) Celine Scornavacca et al.   BMC BIOINFORMATICS

Quartets MaxCut: A Divide and Conquer Quartets Algorithm

(2008) Sagi Snir et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Maximum Likelihood Supertrees

(2008) Mike Steel et al.   SYSTEMATIC BIOLOGY