SuperFine: Fast and Accurate Supertree Estimation

A simulation study comparing supertree and combined analysis methods using SMIDGen

(2010) M Shel Swenson et al.   Algorithms for Molecular Biology

Robinson-Foulds Supertrees

(2010) Mukul S Bansal et al.   Algorithms for Molecular Biology

SUPERTRIPLETS: a triplet-based supertree approach to phylogenomics

(2010) V. Ranwez et al.   BIOINFORMATICS

DendroPy: a Python library for phylogenetic computing

(2010) J. Sukumaran et al.   BIOINFORMATICS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

TNT, a free program for phylogenetic analysis

(2008) Pablo A. Goloboff et al.   CLADISTICS

Quartets MaxCut: A Divide and Conquer Quartets Algorithm

(2008) Sagi Snir et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Maximum Likelihood Supertrees

(2008) Mike Steel et al.   SYSTEMATIC BIOLOGY