CompositeSearch: A Generalized Network Approach for Composite Gene Families Detection

Functional innovation from changes in protein domains and their combinations

(2016) Jonathan G Lees et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

De Novo Genes Arise at a Slow but Steady Rate along the Primate Lineage and Have Been Subject to Incomplete Lineage Sorting

(2016) Daniele Guerzoni et al.   Genome Biology and Evolution

Protein networks identify novel symbiogenetic genes resulting from plastid endosymbiosis

(2016) Raphaël Méheust et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Network-Thinking: Graphs to Analyze Microbial Complexity and Evolution

(2016) Eduardo Corel et al.   TRENDS IN MICROBIOLOGY

Emergence of de novo proteins from 'dark genomic matter' by 'grow slow and moult'

(2015) E. Bornberg-Bauer et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Evaluation of connected-component labeling algorithms for distributed-memory systems

(2015) J. Iverson et al.   PARALLEL COMPUTING

New genes from non-coding sequence: the role of de novo protein-coding genes in eukaryotic evolutionary innovation

(2015) Aoife McLysaght et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Origins of De Novo Genes in Human and Chimpanzee

(2015) Jorge Ruiz-Orera et al.   PLoS Genetics

Extensive Gene Remodeling in the Viral World: New Evidence for Nongradual Evolution in the Mobilome Network

(2014) Pierre-Alain Jachiet et al.   Genome Biology and Evolution

MosaicFinder: identification of fused gene families in sequence similarity networks

(2013) Pierre-Alain Jachiet et al.   BIOINFORMATICS

A Pluralistic Account of Homology: Adapting the Models to the Data

(2013) Leanne S. Haggerty et al.   MOLECULAR BIOLOGY AND EVOLUTION

Experimental evidence validating the computational inference of functional associations from gene fusion events: a critical survey

(2012) V. J. Promponas et al.   BRIEFINGS IN BIOINFORMATICS

Comparative Metagenomic Analysis of Soil Microbial Communities across Three Hexachlorocyclohexane Contamination Levels

(2012) Naseer Sangwan et al.   PLoS One

Detection of Fused Genes in Eukaryotic Genomes using Gene deFuser: Analysis of the Tetrahymena thermophila genome

(2011) Hannah MW Salim et al.   BMC BIOINFORMATICS

Evolution at the Subgene Level: Domain Rearrangements in the Drosophila Phylogeny

(2011) Y.-C. Wu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Origins, evolution, and phenotypic impact of new genes

(2010) H. Kaessmann   GENOME RESEARCH

How do proteins gain new domains?

(2010) Joseph A Marsh et al.   GENOME BIOLOGY

Using Sequence Similarity Networks for Visualization of Relationships Across Diverse Protein Superfamilies

(2009) Holly J. Atkinson et al.   PLoS One

Arrangements in the modular evolution of proteins

(2008) Andrew D. Moore et al.   TRENDS IN BIOCHEMICAL SCIENCES

Sequence Similarity Network Reveals Common Ancestry of Multidomain Proteins

(2008) Nan Song et al.   PLoS Computational Biology