Experimental evidence validating the computational inference of functional associations from gene fusion events: a critical survey

The Crystal Structure ofEscherichia coliGroup 4 Capsule Protein GfcC Reveals a Domain Organization Resembling That of Wza

(2011) Karthik Sathiyamoorthy et al.   BIOCHEMISTRY

Chlorite Dismutases, DyPs, and EfeB: 3 Microbial Heme Enzyme Families Comprise the CDE Structural Superfamily

(2011) Brandon Goblirsch et al.   JOURNAL OF MOLECULAR BIOLOGY

Evolution at the Subgene Level: Domain Rearrangements in the Drosophila Phylogeny

(2011) Y.-C. Wu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Separate inputs modulate phosphorylation-dependent and -independent type VI secretion activation

(2011) Julie M. Silverman et al.   MOLECULAR MICROBIOLOGY

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Experimental and computational approaches for the study of calmodulin interactions

(2011) A.S.N. Reddy et al.   PHYTOCHEMISTRY

A nodulin/glutamine synthetase-like fusion protein is implicated in the regulation of root morphogenesis and in signalling triggered by flagellin

(2011) Anna Doskočilová et al.   PLANTA

Crystal Structure of an Integron Gene Cassette-Associated Protein from Vibrio cholerae Identifies a Cationic Drug-Binding Module

(2011) Chandrika N. Deshpande et al.   PLoS One

Network Archaeology: Uncovering Ancient Networks from Present-Day Interactions

(2011) Saket Navlakha et al.   PLoS Computational Biology

Crystal structures, dynamics and functional implications of molybdenum-cofactor biosynthesis protein MogA from two thermophilic organisms

(2010) Shankar Prasad Kanaujia et al.   Acta Crystallographica Section F-Structural Biology and Crystallization Communications

A systematic study of genome context methods: calibration, normalization and combination

(2010) Luciana Ferrer et al.   BMC BIOINFORMATICS

Structures of the Human GTPase MMAA and Vitamin B12-dependent Methylmalonyl-CoA Mutase and Insight into Their Complex Formation

(2010) D. Sean Froese et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

CDD: a Conserved Domain Database for the functional annotation of proteins

(2010) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

The RJL family of small GTPases is an ancient eukaryotic invention probably functionally associated with the flagellar apparatus

(2009) Marek Elias et al.   GENE

Interdomain Communication in theMycobacterium tuberculosisEnvironmental Phosphatase Rv1364c

(2009) Andrew E. Greenstein et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

IcmF Is a Fusion between the Radical B12Enzyme Isobutyryl-CoA Mutase and Its G-protein Chaperone

(2009) Valentin Cracan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Structural and kinetic analysis of an MsrA-MsrB fusion protein fromStreptococcus pneumoniae

(2009) Young Kwan Kim et al.   MOLECULAR MICROBIOLOGY

Structural basis of inter-protein electron transfer for nitrite reduction in denitrification

(2009) Masaki Nojiri et al.   NATURE

Information Flow Analysis of Interactome Networks

(2009) Patrycja Vasilyev Missiuro et al.   PLoS Computational Biology

At the Periphery of the Amidohydrolase Superfamily:  Bh0493 fromBacillus haloduransCatalyzes the Isomerization ofd-Galacturonate tod-Tagaturonate†,‡

(2008) Tinh T. Nguyen et al.   BIOCHEMISTRY

Predicting protein linkages in bacteria: Which method is best depends on task

(2008) Anis Karimpour-Fard et al.   BMC BIOINFORMATICS

Environmental genomics reveals a functional chlorite dismutase in the nitrite-oxidizing bacterium ‘CandidatusNitrospira defluvii’

(2008) Frank Maixner et al.   ENVIRONMENTAL MICROBIOLOGY

Literature-curated protein interaction datasets

(2008) Michael E Cusick et al.   NATURE METHODS