Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling

Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling

(2017) Uma K. Aryal et al.   Journal of Proteomics

CDPKs and 14-3-3 Proteins: Emerging Duo in Signaling

(2017) Mélanie Ormancey et al.   TRENDS IN PLANT SCIENCE

Arabidopsis NITRILASE 1 Contributes to the Regulation of Root Growth and Development through Modulation of Auxin Biosynthesis in Seedlings

(2017) Thomas Lehmann et al.   Frontiers in Plant Science

Global Membrane Protein Interactome Analysis usingIn vivoCrosslinking and Mass Spectrometry-based Protein Correlation Profiling

(2016) Mark Larance et al.   MOLECULAR & CELLULAR PROTEOMICS

jPOSTrepo: an international standard data repository for proteomes

(2016) Shujiro Okuda et al.   NUCLEIC ACIDS RESEARCH

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

14-3-3 Proteins in Guard Cell Signaling

(2016) Valérie Cotelle et al.   Frontiers in Plant Science

Unravelling plant molecular machineries through affinity purification coupled to mass spectrometry

(2015) Maarten Dedecker et al.   CURRENT OPINION IN PLANT BIOLOGY

Panorama of ancient metazoan macromolecular complexes

(2015) Cuihong Wan et al.   NATURE

2016 update of the PRIDE database and its related tools

(2015) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome

(2014) Cornelia M. Hooper et al.   BIOINFORMATICS

The TPLATE Adaptor Complex Drives Clathrin-Mediated Endocytosis in Plants

(2014) Astrid Gadeyne et al.   CELL

MS-Viewer: A Web-based Spectral Viewer for Proteomics Results

(2014) Peter R. Baker et al.   MOLECULAR & CELLULAR PROTEOMICS

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

(2014) Jürgen Cox et al.   MOLECULAR & CELLULAR PROTEOMICS

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

A Proteomic Strategy for Global Analysis of Plant Protein Complexes

(2014) U. K. Aryal et al.   PLANT CELL

Tyrosine phosphorylation of protein kinase complex BAK1/BIK1 mediatesArabidopsisinnate immunity

(2014) Wenwei Lin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell Surface ABP1-TMK Auxin-Sensing Complex Activates ROP GTPase Signaling

(2014) T. Xu et al.   SCIENCE

Border Control--A Membrane-Linked Interactome of Arabidopsis

(2014) A. M. Jones et al.   SCIENCE

Characterization of Native Protein Complexes and Protein Isoform Variation Using Size-fractionation-based Quantitative Proteomics

(2013) Kathryn J. Kirkwood et al.   MOLECULAR & CELLULAR PROTEOMICS

NITRILASE1 regulates the exit from proliferation, genome stability and plant development

(2013) Anna Doskočilová et al.   NEW PHYTOLOGIST

Inverse modulation of plant immune and brassinosteroid signaling pathways by the receptor-like cytoplasmic kinase BIK1

(2013) W. Lin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Census of Human Soluble Protein Complexes

(2012) Pierre C. Havugimana et al.   CELL

ComplexQuant: High-throughput computational pipeline for the global quantitative analysis of endogenous soluble protein complexes using high resolution protein HPLC and precision label-free LC/MS/MS

(2012) Cuihong Wan et al.   Journal of Proteomics

CLE and RGF Family Peptide Hormone Signaling in Plant Development

(2012) Colin D Leasure et al.   Molecular Plant

A high-throughput approach for measuring temporal changes in the interactome

(2012) Anders R Kristensen et al.   NATURE METHODS

PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees

(2012) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

SnRK2 Protein Kinases—Key Regulators of Plant Response to Abiotic Stresses

(2011) Anna Kulik et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Defining the Protein Complex Proteome of Plant Mitochondria

(2011) J. Klodmann et al.   PLANT PHYSIOLOGY

E2F1 Regulates Cellular Growth by mTORC1 Signaling

(2011) Sebastian Real et al.   PLoS One

Quantitation in Mass-Spectrometry-Based Proteomics

(2010) Waltraud X. Schulze et al.   Annual Review of Plant Biology

Receptor-like Cytoplasmic Kinases Integrate Signaling from Multiple Plant Immune Receptors and Are Targeted by a Pseudomonas syringae Effector

(2010) Jie Zhang et al.   Cell Host & Microbe

SPIKE1 Signals Originate from and Assemble Specialized Domains of the Endoplasmic Reticulum

(2010) Chunhua Zhang et al.   CURRENT BIOLOGY

Megadalton Complexes in the Chloroplast Stroma ofArabidopsis thalianaCharacterized by Size Exclusion Chromatography, Mass Spectrometry, and Hierarchical Clustering

(2010) Paul Dominic B. Olinares et al.   MOLECULAR & CELLULAR PROTEOMICS

Membrane budding and scission by the ESCRT machinery: it's all in the neck

(2010) James H. Hurley et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score

(2010) Leszek P. Pryszcz et al.   NUCLEIC ACIDS RESEARCH

Finite Element Model of Polar Growth in Pollen Tubes

(2010) P. Fayant et al.   PLANT CELL

New insights into ferritin synthesis and function highlight a link between iron homeostasis and oxidative stress in plants

(2009) Jean-Francois Briat et al.   ANNALS OF BOTANY

Regulation of Cell Death and Innate Immunity by Two Receptor-like Kinases in Arabidopsis

(2009) Minghui Gao et al.   Cell Host & Microbe

Brassinosteroid signal transduction from cell-surface receptor kinases to nuclear transcription factors

(2009) Tae-Wuk Kim et al.   NATURE CELL BIOLOGY

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

(2009) G. Ostlund et al.   NUCLEIC ACIDS RESEARCH

The Association of the Arabidopsis Actin-Related Protein2/3 Complex with Cell Membranes Is Linked to Its Assembly Status But Not Its Activation

(2009) S. O. Kotchoni et al.   PLANT PHYSIOLOGY

A receptor-like cytoplasmic kinase, BIK1, associates with a flagellin receptor complex to initiate plant innate immunity

(2009) D. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nitrilase enzymes and their role in plant-microbe interactions

(2009) Andrew J. M. Howden et al.   Microbial Biotechnology

RIN4 Functions with Plasma Membrane H+-ATPases to Regulate Stomatal Apertures during Pathogen Attack

(2009) Jun Liu et al.   PLOS BIOLOGY

DAnTE: a statistical tool for quantitative analysis of -omics data

(2008) A. D. Polpitiya et al.   BIOINFORMATICS

Features of the primary wall CESA complex in wild type and cellulose-deficient mutants of Arabidopsis thaliana

(2008) J. Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Specific Phosphopeptide Enrichment with Immobilized Titanium Ion Affinity Chromatography Adsorbent for Phosphoproteome Analysis

(2008) Houjiang Zhou et al.   JOURNAL OF PROTEOME RESEARCH

An Exocyst Complex Functions in Plant Cell Growth in Arabidopsis and Tobacco

(2008) M. Hala et al.   PLANT CELL

A SPIKE1 signaling complex controls actin-dependent cell morphogenesis through the heteromeric WAVE and ARP2/3 complexes

(2008) D. Basu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Toward chromatographic analysis of interacting protein networks

(2007) Xiuping Liu et al.   JOURNAL OF CHROMATOGRAPHY A