Natural Escherichia coli isolates rapidly acquire genetic changes upon laboratory domestication

Epidemiology and Clinical Manifestations of Enteroaggregative Escherichia coli

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The rpoS Gene Is Predominantly Inactivated during Laboratory Storage and Undergoes Source-Sink Evolution in Escherichia coli Species

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Mutations in Global Regulators Lead to Metabolic Selection during Adaptation to Complex Environments

(2014) Gerda Saxer et al.   PLoS Genetics

The form of a trade-off determines the response to competition

(2013) Ram Maharjan et al.   ECOLOGY LETTERS

The nature of laboratory domestication changes in freshly isolatedEscherichia colistrains

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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

Culture History and Population Heterogeneity as Determinants of Bacterial Adaptation: the Adaptomics of a Single Environmental Transition

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Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing

(2012) H. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Capsule Type of Streptococcus pneumoniae Determines Growth Phenotype

(2012) Lucy J. Hathaway et al.   PLoS Pathogens

The multiplicity of divergence mechanisms in a single evolving population

(2012) Ram P Maharjan et al.   GENOME BIOLOGY

ProQ Is an RNA Chaperone that Controls ProP Levels inEscherichia coli

(2011) Steven G. Chaulk et al.   BIOCHEMISTRY

The constancy of global regulation across a species: the concentrations of ppGpp and RpoS are strain-specific in Escherichia coli

(2011) Thomas Ferenci et al.   BMC MICROBIOLOGY

The uncertain consequences of transferring bacterial strains between laboratories - rpoS instability as an example

(2011) Beny Spira et al.   BMC MICROBIOLOGY

Newly Identified Genetic Variations in Common Escherichia coli MG1655 Stock Cultures

(2011) P. L. Freddolino et al.   JOURNAL OF BACTERIOLOGY

Rates of Mutation and Host Transmission for an Escherichia coli Clone over 3 Years

(2011) Peter R. Reeves et al.   PLoS One

An integrative approach to understanding microbial diversity: from intracellular mechanisms to community structure

(2010) Ivana Gudelj et al.   ECOLOGY LETTERS

Derivation of Escherichia coli O157:H7 from Its O55:H7 Precursor

(2010) Zhemin Zhou et al.   PLoS One

Fis Is Essential for Capsule Production in Pasteurella multocida and Regulates Expression of Other Important Virulence Factors

(2010) Jason A. Steen et al.   PLoS Pathogens

Molecular and Evolutionary Bases of Within-Patient Genotypic and Phenotypic Diversity in Escherichia coli Extraintestinal Infections

(2010) Maxime Levert et al.   PLoS Pathogens

Genomic Sequencing Reveals Regulatory Mutations and Recombinational Events in the Widely Used MC4100 Lineage of Escherichia coli K-12

(2009) T. Ferenci et al.   JOURNAL OF BACTERIOLOGY

Understanding the Differences between Genome Sequences of Escherichia coli B Strains REL606 and BL21(DE3) and Comparison of the E. coli B and K-12 Genomes

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Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations

(2009) Tom M Conrad et al.   GENOME BIOLOGY

Evolutionary loss of the rdar morphotype in Salmonella as a result of high mutation rates during laboratory passage

(2008) Carla J Davidson et al.   ISME Journal

Strain variation in ppGpp concentration and RpoS levels in laboratory strains of Escherichia coli K-12

(2008) B. Spira et al.   MICROBIOLOGY-SGM

Accurate whole human genome sequencing using reversible terminator chemistry

(2008) David R. Bentley et al.   NATURE