Distinctive Soil Archaeal Communities in Different Variants of Tropical Equatorial Forest

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

White-sand Ecosystems in Amazonia

(2016) J. Marion Adeney et al.   BIOTROPICA

Land use intensification in the humid tropics increased both alpha and beta diversity of soil bacteria

(2016) Teotonio Soares de Carvalho et al.   ECOLOGY

Abundance and Diversity of Bacterial, Archaeal, and Fungal Communities Along an Altitudinal Gradient in Alpine Forest Soils: What Are the Driving Factors?

(2016) José A. Siles et al.   MICROBIAL ECOLOGY

The impact of tropical forest logging and oil palm agriculture on the soil microbiome

(2016) Binu M. Tripathi et al.   MOLECULAR ECOLOGY

Archaeal Community Changes Associated with Cultivation of Amazon Forest Soil with Oil Palm

(2016) Daiva Domenech Tupinambá et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Distinctive Tropical Forest Variants Have Unique Soil Microbial Communities, But Not Always Low Microbial Diversity

(2016) Binu M. Tripathi et al.   Frontiers in Microbiology

The biogeography of soil archaeal communities on the eastern Tibetan Plateau

(2016) Yu Shi et al.   Scientific Reports

Similarities and Contrasts in the Archaeal Community of Two Japanese Mountains: Mt. Norikura Compared to Mt. Fuji

(2015) Dharmesh Singh et al.   MICROBIAL ECOLOGY

Decrease in diversity and changes in community composition of arbuscular mycorrhizal fungi in roots of apple trees with increasing orchard management intensity across a regional scale

(2015) Maarten van Geel et al.   MOLECULAR ECOLOGY

Soil pH and biome are both key determinants of soil archaeal community structure

(2015) Binu M. Tripathi et al.   SOIL BIOLOGY & BIOCHEMISTRY

Generalized Soil Thaumarchaeota Community in Weathering Rock and Saprolite

(2014) Ke Dong et al.   MICROBIAL ECOLOGY

The Impact of Selective-Logging and Forest Clearance for Oil Palm on Fungal Communities in Borneo

(2014) Dorsaf Kerfahi et al.   PLoS One

Impact of Logging and Forest Conversion to Oil Palm Plantations on Soil Bacterial Communities in Borneo

(2013) Larisa Lee-Cruz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Spatial Distribution and Factors Shaping the Niche Segregation of Ammonia-Oxidizing Microorganisms in the Qiantang River, China

(2013) Shuai Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

pH dominates variation in tropical soil archaeal diversity and community structure

(2013) Binu M. Tripathi et al.   FEMS MICROBIOLOGY ECOLOGY

Nitrification rates in Arctic soils are associated with functionally distinct populations of ammonia-oxidizing archaea

(2013) Ricardo J Eloy Alves et al.   ISME Journal

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes

(2013) Jianjun Wang et al.   ISME Journal

Physiology and Diversity of Ammonia-Oxidizing Archaea

(2012) David A. Stahl et al.   Annual Review of Microbiology

Archaeal Abundance across a pH Gradient in an Arable Soil and Its Relationship to Bacterial and Fungal Growth Rates

(2012) Per Bengtson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Partitioning ofThaumarchaeotapopulations along environmental gradients in high mountain lakes

(2012) Jean-Christophe Auguet et al.   FEMS MICROBIOLOGY ECOLOGY

Stochastic and deterministic drivers of spatial and temporal turnover in breeding bird communities

(2012) James C. Stegen et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

Tropical Soil Bacterial Communities in Malaysia: pH Dominates in the Equatorial Tropics Too

(2012) Binu M. Tripathi et al.   MICROBIAL ECOLOGY

Distinct Soil Bacterial Communities Revealed under a Diversely Managed Agroecosystem

(2012) Raymon S. Shange et al.   PLoS One

Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities

(2012) J. L. M. Rodrigues et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Current insights into the autotrophic thaumarchaeal ammonia oxidation in acidic soils

(2012) Ji-Zheng He et al.   SOIL BIOLOGY & BIOCHEMISTRY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Anaerobic oxidation of methane with sulfate: on the reversibility of the reactions that are catalyzed by enzymes also involved in methanogenesis from CO2

(2011) Rudolf K Thauer   CURRENT OPINION IN MICROBIOLOGY

Distribution and diversity of archaeal communities in selected Chinese soils

(2011) Peng Cao et al.   FEMS MICROBIOLOGY ECOLOGY

Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species

(2011) O.-S. Kim et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Ammonia-oxidizing archaea have more important role than ammonia-oxidizing bacteria in ammonia oxidation of strongly acidic soils

(2011) Li-Mei Zhang et al.   ISME Journal

Primary forests are irreplaceable for sustaining tropical biodiversity

(2011) Luke Gibson et al.   NATURE

Arctic Ocean Microbial Community Structure before and after the 2007 Record Sea Ice Minimum

(2011) André M. Comeau et al.   PLoS One

A Floristic Study of the White-Sand Forests of Peru1

(2010) Paul V. A. Fine et al.   ANNALS OF THE MISSOURI BOTANICAL GARDEN

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

Examining the global distribution of dominant archaeal populations in soil

(2010) Scott T Bates et al.   ISME Journal

Degraded lands worth protecting: the biological importance of Southeast Asia's repeatedly logged forests

(2010) D. P. Edwards et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Stochastic Community Assembly Causes Higher Biodiversity in More Productive Environments

(2010) J. M. Chase   SCIENCE

Heterogeneity of archaeal and bacterial ammonia-oxidizing communities in Lake Taihu, China

(2010) Yucheng Wu et al.   Environmental Microbiology Reports

Wildlife-friendly oil palm plantations fail to protect biodiversity effectively

(2010) David P. Edwards et al.   Conservation Letters

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biogeography of soil archaea and bacteria along a steep precipitation gradient

(2009) Roey Angel et al.   ISME Journal

Phylocom: software for the analysis of phylogenetic community structure and trait evolution

(2008) Campbell O. Webb et al.   BIOINFORMATICS

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria

(2008) Graeme W. Nicol et al.   ENVIRONMENTAL MICROBIOLOGY

Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment

(2008) James I. Prosser et al.   ENVIRONMENTAL MICROBIOLOGY

Significant contribution of Archaea to extant biomass in marine subsurface sediments

(2008) Julius S. Lipp et al.   NATURE

Methanogenic archaea: ecologically relevant differences in energy conservation

(2008) Rudolf K. Thauer et al.   NATURE REVIEWS MICROBIOLOGY

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY

Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use

(2008) V. Acosta-Martínez et al.   SOIL BIOLOGY & BIOCHEMISTRY