13C-assisted metabolic flux analysis to investigate heterotrophic and mixotrophic metabolism in Cupriavidus necator H16

High cell density strategy for poly(3-hydroxybutyrate) production by Cupriavidus necator

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New Insight into the Role of the Calvin Cycle: Reutilization of CO2 Emitted through Sugar Degradation

(2015) Rie Shimizu et al.   Scientific Reports

Study of metabolic network of Cupriavidus necator DSM 545 growing on glycerol by applying elementary flux modes and yield space analysis

(2014) Markan Lopar et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Detection of phase-dependent transcriptomic changes and Rubisco-mediated CO2 fixation into poly (3-hydroxybutyrate) under heterotrophic condition in Ralstonia eutropha H16 based on RNA-seq and gene deletion analyses

(2013) Rie Shimizu et al.   BMC MICROBIOLOGY

Metabolite profiles of polyhydroxyalkanoate-producing Ralstonia eutropha H16

(2013) Toshiaki Fukui et al.   Metabolomics

Metabolic flux analysis of Cyanothece sp. ATCC 51142 under mixotrophic conditions

(2013) Swathi Alagesan et al.   PHOTOSYNTHESIS RESEARCH

13CFLUX2—high-performance software suite for 13C-metabolic flux analysis

(2012) Michael Weitzel et al.   BIOINFORMATICS

IsoCor: correcting MS data in isotope labeling experiments

(2012) P. Millard et al.   BIOINFORMATICS

Microbial synthesis of polyhydroxybutyrate from glycerol: Gluconeogenesis, molecular weight and material properties of biopolyester

(2012) Nuttapol Tanadchangsaeng et al.   BIOTECHNOLOGY AND BIOENGINEERING

iMS2Flux – a high–throughput processing tool for stable isotope labeled mass spectrometric data used for metabolic flux analysis

(2012) C Hart Poskar et al.   BMC BIOINFORMATICS

Genome-scale reconstruction and in silico analysis of the Ralstonia eutropha H16 for polyhydroxyalkanoate synthesis, lithoautotrophic growth, and 2-methyl citric acid production

(2011) Jong Park et al.   BMC Systems Biology

Elucidation of  -Oxidation Pathways in Ralstonia eutropha H16 by Examination of Global Gene Expression

(2010) C. J. Brigham et al.   JOURNAL OF BACTERIOLOGY

Genome-wide transcriptome analyses of the 'Knallgas' bacterium Ralstonia eutropha H16 with regard to polyhydroxyalkanoate metabolism

(2010) K. Peplinski et al.   MICROBIOLOGY-SGM

Mixotrophic and photoheterotrophic metabolism in Cyanothece sp. ATCC 51142 under continuous light

(2010) X. Feng et al.   MICROBIOLOGY-SGM

OpenFLUX: efficient modelling software for 13C-based metabolic flux analysis

(2009) Lake-Ee Quek et al.   Microbial Cell Factories

13C-based metabolic flux analysis

(2009) Nicola Zamboni et al.   Nature Protocols

A proteomic view of the facultatively chemolithoautotrophic lifestyle ofRalstonia eutrophaH16

(2009) Edward Schwartz et al.   PROTEOMICS

Ralstonia eutropha H16 Flagellation Changes According to Nutrient Supply and State of Poly(3-Hydroxybutyrate) Accumulation

(2008) M. Raberg et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY