Unravelling the complex trait of seed quality: using natural variation through a combination of physiology, genetics and -omics technologies

The impact of next-generation sequencing on genomics

(2011) Jun Zhang et al.   Journal of Genetics and Genomics

Quantitative trait loci analysis reveals a correlation between the ratio of sucrose/raffinose family oligosaccharides and seed vigour in Medicago truncatula

(2011) CÉLINE VANDECASTEELE et al.   PLANT CELL AND ENVIRONMENT

Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions

(2011) G. W. Bassel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A PQL (protein quantity loci) analysis of mature pea seed proteins identifies loci determining seed protein composition

(2011) Michael Bourgeois et al.   PROTEOMICS

Population genetics of genomics-based crop improvement methods

(2011) Martha T. Hamblin et al.   TRENDS IN GENETICS

Global Genetic Robustness of the Alternative Splicing Machinery in Caenorhabditis elegans

(2010) Yang Li et al.   GENETICS

Regulatory divergence in Drosophila revealed by mRNA-seq

(2010) C. J. McManus et al.   GENOME RESEARCH

The earliest stages of adaptation in an experimental plant population: strong selection on QTLS for seed dormancy

(2010) XUEQING HUANG et al.   MOLECULAR ECOLOGY

Transcriptome genetics using second generation sequencing in a Caucasian population

(2010) Stephen B. Montgomery et al.   NATURE

Understanding mechanisms underlying human gene expression variation with RNA sequencing

(2010) Joseph K. Pickrell et al.   NATURE

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

Association genetics of complex traits in plants

(2010) Pär K. Ingvarsson et al.   NEW PHYTOLOGIST

Natural Variation in Arabidopsis thaliana Revealed a Genetic Network Controlling Germination Under Salt Stress

(2010) Navot Galpaz et al.   PLoS One

Natural variation for seed dormancy in Arabidopsis is regulated by additive genetic and molecular pathways

(2010) L. Bentsink et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana

(2010) Y. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

QTL analysis of seed germination and pre-emergence growth at extreme temperatures in Medicago truncatula

(2010) Paula Menna Barreto Dias et al.   THEORETICAL AND APPLIED GENETICS

Network Analysis Identifies ELF3 as a QTL for the Shade Avoidance Response in Arabidopsis

(2010) José M. Jiménez-Gómez et al.   PLoS Genetics

Linkage and Association Mapping of Arabidopsis thaliana Flowering Time in Nature

(2010) Benjamin Brachi et al.   PLoS Genetics

A Coastal Cline in Sodium Accumulation in Arabidopsis thaliana Is Driven by Natural Variation of the Sodium Transporter AtHKT1;1

(2010) Ivan Baxter et al.   PLoS Genetics

Genome analysis and genetic enhancement of tomato

(2009) Vikrant Gupta et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

Advances in Genetical Genomics of Plants

(2009) R. Joosen et al.   CURRENT GENOMICS

Genetical metabolomics: closing in on phenotypes

(2009) Joost JB Keurentjes   CURRENT OPINION IN PLANT BIOLOGY

Global Analysis of Allele-Specific Expression in Arabidopsis thaliana

(2009) Xu Zhang et al.   GENETICS

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

(2009) BJ��RN USADEL et al.   PLANT CELL AND ENVIRONMENT

germinator: a software package for high-throughput scoring and curve fitting of Arabidopsis seed germination

(2009) Ronny V. L. Joosen et al.   PLANT JOURNAL

High-Throughput Quantification of Root Growth Using a Novel Image-Analysis Tool

(2009) A. French et al.   PLANT PHYSIOLOGY

Next-generation sequencing technologies and their implications for crop genetics and breeding

(2009) Rajeev K. Varshney et al.   TRENDS IN BIOTECHNOLOGY

Digital imaging information technology applied to seed germination testing. A review

(2008) Antonio Dell’ Aquila   Agronomy for Sustainable Development

Quantitative Genomics: Analyzing Intraspecific Variation Using Global Gene Expression Polymorphisms or eQTLs

(2008) Dan Kliebenstein   Annual Review of Plant Biology

Genetic and molecular approaches to improve nutritional value of Brassica napus L. seed

(2008) Nathalie Nesi et al.   COMPTES RENDUS BIOLOGIES

Linkage disequilibrium, genetic association mapping and gene localization in crop plants

(2008) Karim Sorkheh et al.   GENETICS AND MOLECULAR BIOLOGY

Arabidopsis Transcriptome Analysis under Drought, Cold, High-Salinity and ABA Treatment Conditions using a Tiling Array

(2008) A. Matsui et al.   PLANT AND CELL PHYSIOLOGY

EZ-Rhizo: integrated software for the fast and accurate measurement of root system architecture

(2008) Patrick Armengaud et al.   PLANT JOURNAL

Genetic Variation for Lettuce Seed Thermoinhibition Is Associated with Temperature-Sensitive Expression of Abscisic Acid, Gibberellin, and Ethylene Biosynthesis, Metabolism, and Response Genes

(2008) J. Argyris et al.   PLANT PHYSIOLOGY

Generalizing genetical genomics: getting added value from environmental perturbation

(2008) Yang Li et al.   TRENDS IN GENETICS

Whole genome transcriptome polymorphisms in Arabidopsis thaliana

(2008) Xu Zhang et al.   GENOME BIOLOGY

At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana

(2008) Sascha Laubinger et al.   GENOME BIOLOGY

Gene expression quantitative trait locus analysis of 16 000 barley genes reveals a complex pattern of genome-wide transcriptional regulation

(2007) Elena Potokina et al.   PLANT JOURNAL