Studies of cortical connectivity using optical circuit mapping methods

Optogenetic Examination of Prefrontal-Amygdala Synaptic Development

(2017) Maithe Arruda-Carvalho et al.   JOURNAL OF NEUROSCIENCE

Abnormal wiring of CCK+ basket cells disrupts spatial information coding

(2017) Isabel del Pino et al.   NATURE NEUROSCIENCE

AAV-Mediated Anterograde Transsynaptic Tagging: Mapping Corticocollicular Input-Defined Neural Pathways for Defense Behaviors

(2017) Brian Zingg et al.   NEURON

Experience-Dependent and Differential Regulation of Local and Long-Range Excitatory Neocortical Circuits by Postsynaptic Mef2c

(2017) Kacey E. Rajkovich et al.   NEURON

Cell-Type-Specific Optical Recording of Membrane Voltage Dynamics in Freely Moving Mice

(2016) Jesse D. Marshall et al.   CELL

Distinct Hippocampal Pathways Mediate Dissociable Roles of Context in Memory Retrieval

(2016) Chun Xu et al.   CELL

Inhibitory Gating of Basolateral Amygdala Inputs to the Prefrontal Cortex

(2016) Laura M. McGarry et al.   JOURNAL OF NEUROSCIENCE

Multilaminar networks of cortical neurons integrate common inputs from sensory thalamus

(2016) Nicolás A Morgenstern et al.   NATURE NEUROSCIENCE

Disentangling neural cell diversity using single-cell transcriptomics

(2016) Jean-Francois Poulin et al.   NATURE NEUROSCIENCE

Molecular interrogation of hypothalamic organization reveals distinct dopamine neuronal subtypes

(2016) Roman A Romanov et al.   NATURE NEUROSCIENCE

A viral strategy for targeting and manipulating interneurons across vertebrate species

(2016) Jordane Dimidschstein et al.   NATURE NEUROSCIENCE

Neuregulin-1/ErbB4 Signaling Regulates Visual Cortical Plasticity

(2016) Yanjun Sun et al.   NEURON

A Transient Translaminar GABAergic Interneuron Circuit Connects Thalamocortical Recipient Layers in Neonatal Somatosensory Cortex

(2016) Andre Marques-Smith et al.   NEURON

Early Somatostatin Interneuron Connectivity Mediates the Maturation of Deep Layer Cortical Circuits

(2016) Sebnem N. Tuncdemir et al.   NEURON

Strategies and Tools for Combinatorial Targeting of GABAergic Neurons in Mouse Cerebral Cortex

(2016) Miao He et al.   NEURON

Single-cell RNAseq reveals cell adhesion molecule profiles in electrophysiologically defined neurons

(2016) Csaba Földy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gating of hippocampal activity, plasticity, and memory by entorhinal cortex long-range inhibition

(2016) J. Basu et al.   SCIENCE

Two-Photon Holographic Stimulation of ReaChR

(2016) Emmanuelle Chaigneau et al.   Frontiers in Cellular Neuroscience

GABAergic interneurons form transient layer-specific circuits in early postnatal neocortex

(2016) Paul G. Anastasiades et al.   Nature Communications

Recruitment of inhibition and excitation across mouse visual cortex depends on the hierarchy of interconnecting areas

(2016) Rinaldo David D'Souza et al.   eLife

Cellular resolution circuit mapping with temporal-focused excitation of soma-targeted channelrhodopsin

(2016) Christopher A Baker et al.   eLife

Clusters of synaptic inputs on dendrites of layer 5 pyramidal cells in mouse visual cortex

(2016) Onur Gökçe et al.   eLife

Reconstruction and Simulation of Neocortical Microcircuitry

(2015) Henry Markram et al.   CELL

Circuit Architecture of VTA Dopamine Neurons Revealed by Systematic Input-Output Mapping

(2015) Kevin T. Beier et al.   CELL

Reciprocal Interareal Connections to Corticospinal Neurons in Mouse M1 and S2

(2015) B. A. Suter et al.   JOURNAL OF NEUROSCIENCE

Callosal Projections Drive Neuronal-Specific Responses in the Mouse Auditory Cortex

(2015) C. Rock et al.   JOURNAL OF NEUROSCIENCE

Temporal Dynamics of L5 Dendrites in Medial Prefrontal Cortex Regulate Integration Versus Coincidence Detection of Afferent Inputs

(2015) N. C. Dembrow et al.   JOURNAL OF NEUROSCIENCE

Synaptic Circuit Organization of Motor Corticothalamic Neurons

(2015) N. Yamawaki et al.   JOURNAL OF NEUROSCIENCE

Dual-Channel Circuit Mapping Reveals Sensorimotor Convergence in the Primary Motor Cortex

(2015) B. M. Hooks et al.   JOURNAL OF NEUROSCIENCE

The Mediodorsal Thalamus Drives Feedforward Inhibition in the Anterior Cingulate Cortex via Parvalbumin Interneurons

(2015) K. Delevich et al.   JOURNAL OF NEUROSCIENCE

Cell type–specific manipulation with GFP-dependent Cre recombinase

(2015) Jonathan C Y Tang et al.   NATURE NEUROSCIENCE

Connectivity of mouse somatosensory and prefrontal cortex examined with trans-synaptic tracing

(2015) Laura A DeNardo et al.   NATURE NEUROSCIENCE

A direct translaminar inhibitory circuit tunes cortical output

(2015) Scott Pluta et al.   NATURE NEUROSCIENCE

The neocortical circuit: themes and variations

(2015) Kenneth D Harris et al.   NATURE NEUROSCIENCE

A Corticothalamic Switch: Controlling the Thalamus with Dynamic Synapses

(2015) Shane R. Crandall et al.   NEURON

Instructing Perisomatic Inhibition by Direct Lineage Reprogramming of Neocortical Projection Neurons

(2015) Zhanlei Ye et al.   NEURON

Dysfunction of Cortical Dendritic Integration in Neuropathic Pain Reversed by Serotoninergic Neuromodulation

(2015) Mirko Santello et al.   NEURON

Single-Cell mRNA Profiling Reveals Cell-Type-Specific Expression of Neurexin Isoforms

(2015) Marc V. Fuccillo et al.   NEURON

Diversity of Transgenic Mouse Models for Selective Targeting of Midbrain Dopamine Neurons

(2015) Stephan Lammel et al.   NEURON

Adult cortical plasticity depends on an early postnatal critical period

(2015) S. D. Greenhill et al.   SCIENCE

Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

(2015) A. Zeisel et al.   SCIENCE

Principles of connectivity among morphologically defined cell types in adult neocortex

(2015) X. Jiang et al.   SCIENCE

Visual Deprivation Causes Refinement of Intracortical Circuits in the Auditory Cortex

(2015) Xiangying Meng et al.   Cell Reports

Corelease of acetylcholine and GABA from cholinergic forebrain neurons

(2015) Arpiar Saunders et al.   eLife

Transient Hearing Loss Within a Critical Period Causes Persistent Changes to Cellular Properties in Adult Auditory Cortex

(2014) Todd M. Mowery et al.   CEREBRAL CORTEX

Achieving High-Frequency Optical Control of Synaptic Transmission

(2014) S. L. Jackman et al.   JOURNAL OF NEUROSCIENCE

GABA-A Receptor Inhibition of Local Calcium Signaling in Spines and Dendrites

(2014) J. J. Marlin et al.   JOURNAL OF NEUROSCIENCE

A fourth generation of neuroanatomical tracing techniques: Exploiting the offspring of genetic engineering

(2014) Floris G. Wouterlood et al.   JOURNAL OF NEUROSCIENCE METHODS

Equalizing excitation–inhibition ratios across visual cortical neurons

(2014) Mingshan Xue et al.   NATURE

Independent optical excitation of distinct neural populations

(2014) Nathan C Klapoetke et al.   NATURE METHODS

Simultaneous all-optical manipulation and recording of neural circuit activity with cellular resolution in vivo

(2014) Adam M Packer et al.   NATURE METHODS

Cocaine exposure reorganizes cell type– and input-specific connectivity in the nucleus accumbens

(2014) Andrew F MacAskill et al.   NATURE NEUROSCIENCE

Unbiased classification of sensory neuron types by large-scale single-cell RNA sequencing

(2014) Dmitry Usoskin et al.   NATURE NEUROSCIENCE

Translaminar Inhibitory Cells Recruited by Layer 6 Corticothalamic Neurons Suppress Visual Cortex

(2014) Dante S. Bortone et al.   NEURON

Distinct Balance of Excitation and Inhibition in an Interareal Feedforward and Feedback Circuit of Mouse Visual Cortex

(2013) W. Yang et al.   JOURNAL OF NEUROSCIENCE

Transgene Expression in Target-Defined Neuron Populations Mediated by Retrograde Infection with Adeno-Associated Viral Vectors

(2013) M. Rothermel et al.   JOURNAL OF NEUROSCIENCE

Organization of Cortical and Thalamic Input to Pyramidal Neurons in Mouse Motor Cortex

(2013) B. M. Hooks et al.   JOURNAL OF NEUROSCIENCE

Synaptic Mechanisms Underlying Strong Reciprocal Connectivity between the Medial Prefrontal Cortex and Basolateral Amygdala

(2013) J. P. Little et al.   JOURNAL OF NEUROSCIENCE

The emergence of functional microcircuits in visual cortex

(2013) Ho Ko et al.   NATURE

A disinhibitory microcircuit initiates critical-period plasticity in the visual cortex

(2013) Sandra J. Kuhlman et al.   NATURE

Inhibition of inhibition in visual cortex: the logic of connections between molecularly distinct interneurons

(2013) Carsten K Pfeffer et al.   NATURE NEUROSCIENCE

ReaChR: a red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation

(2013) John Y Lin et al.   NATURE NEUROSCIENCE

The organization of two new cortical interneuronal circuits

(2013) Xiaolong Jiang et al.   NATURE NEUROSCIENCE

A disinhibitory circuit mediates motor integration in the somatosensory cortex

(2013) Soohyun Lee et al.   NATURE NEUROSCIENCE

Permanent Genetic Access to Transiently Active Neurons via TRAP: Targeted Recombination in Active Populations

(2013) Casey J. Guenthner et al.   NEURON

Pyramidal Neurons in Prefrontal Cortex Receive Subtype-Specific Forms of Excitation and Inhibition

(2013) Anthony T. Lee et al.   NEURON

rAAV-Mediated Subcellular Targeting of Optogenetic Tools in Retinal Ganglion Cells In Vivo

(2013) Chaowen Wu et al.   PLoS One

Analysis of Transduction Efficiency, Tropism and Axonal Transport of AAV Serotypes 1, 2, 5, 6, 8 and 9 in the Mouse Brain

(2013) Dominik F. Aschauer et al.   PLoS One

A Neural Circuit for Memory Specificity and Generalization

(2013) W. Xu et al.   SCIENCE

Not all that glitters is gold: off-target recombination in the somatostatin–IRES-Cre mouse line labels a subset of fast-spiking interneurons

(2013) Hang Hu et al.   Frontiers in Neural Circuits

Axonal and subcellular labelling using modified rabies viral vectors

(2013) Ian R. Wickersham et al.   Nature Communications

Optogenetic dissection of neural circuits underlying emotional valence and motivated behaviors

(2012) Edward H. Nieh et al.   BRAIN RESEARCH

Axo-Dendritic Overlap and Laminar Projection Can Explain Interneuron Connectivity to Pyramidal Cells

(2012) Adam M. Packer et al.   CEREBRAL CORTEX

Changing Microcircuits in the Subplate of the Developing Cortex

(2012) S. Viswanathan et al.   JOURNAL OF NEUROSCIENCE

A Role for Silent Synapses in the Development of the Pathway from Layer 2/3 to 5 Pyramidal Cells in the Neocortex

(2012) P. G. Anastasiades et al.   JOURNAL OF NEUROSCIENCE

Laminarly Orthogonal Excitation of Fast-Spiking and Low-Threshold-Spiking Interneurons in Mouse Motor Cortex

(2012) A. J. Apicella et al.   JOURNAL OF NEUROSCIENCE

Subcellular Synaptic Connectivity of Layer 2 Pyramidal Neurons in the Medial Prefrontal Cortex

(2012) J. P. Little et al.   JOURNAL OF NEUROSCIENCE

Thalamic Control of Layer 1 Circuits in Prefrontal Cortex

(2012) S. J. Cruikshank et al.   JOURNAL OF NEUROSCIENCE

Gain control by layer six in cortical circuits of vision

(2012) Shawn R. Olsen et al.   NATURE

Dopaminergic neurons inhibit striatal output through non-canonical release of GABA

(2012) Nicolas X. Tritsch et al.   NATURE

Two-photon optogenetics of dendritic spines and neural circuits

(2012) Adam M Packer et al.   NATURE METHODS

Two-photon optogenetic toolbox for fast inhibition, excitation and bistable modulation

(2012) Rohit Prakash et al.   NATURE METHODS

Subcellular connectivity underlies pathway-specific signaling in the nucleus accumbens

(2012) Andrew F MacAskill et al.   NATURE NEUROSCIENCE

A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing

(2012) Linda Madisen et al.   NATURE NEUROSCIENCE

Novel recombinant adeno-associated viruses for Cre activated and inactivated transgene expression in neurons

(2012) Arpiar Saunders et al.   Frontiers in Neural Circuits

Excitatory neuronal connectivity in the barrel cortex

(2012) Dirk Feldmeyer   Frontiers in Neuroanatomy

Optogenetic Control of Cells and Circuits

(2011) Gero Miesenböck   Annual Review of Cell and Developmental Biology

The Microbial Opsin Family of Optogenetic Tools

(2011) Feng Zhang et al.   CELL

Cell Type–Specific Three-Dimensional Structure of Thalamocortical Circuits in a Column of Rat Vibrissal Cortex

(2011) Marcel Oberlaender et al.   CEREBRAL CORTEX

Decoding the transcriptional basis for GABAergic interneuron diversity in the mouse neocortex

(2011) Paul G. Anastasiades et al.   EUROPEAN JOURNAL OF NEUROSCIENCE

Circuit-Specific Intracortical Hyperconnectivity in Mice with Deletion of the Autism-Associated Met Receptor Tyrosine Kinase

(2011) S. Qiu et al.   JOURNAL OF NEUROSCIENCE

Dense, Unspecific Connectivity of Neocortical Parvalbumin-Positive Interneurons: A Canonical Microcircuit for Inhibition?

(2011) A. M. Packer et al.   JOURNAL OF NEUROSCIENCE

Highly Differentiated Projection-Specific Cortical Subnetworks

(2011) M. Morishima et al.   JOURNAL OF NEUROSCIENCE

Functional specificity of local synaptic connections in neocortical networks

(2011) Ho Ko et al.   NATURE

Neocortical excitation/inhibition balance in information processing and social dysfunction

(2011) Ofer Yizhar et al.   NATURE

mGRASP enables mapping mammalian synaptic connectivity with light microscopy

(2011) Jinhyun Kim et al.   NATURE METHODS

New Rabies Virus Variants for Monitoring and Manipulating Activity and Gene Expression in Defined Neural Circuits

(2011) Fumitaka Osakada et al.   NEURON

Maturation of a Recurrent Excitatory Neocortical Circuit by Experience-Dependent Unsilencing of Newly Formed Dendritic Spines

(2011) Michael C. Ashby et al.   NEURON

Long-Range Neuronal Circuits Underlying the Interaction between Sensory and Motor Cortex

(2011) Tianyi Mao et al.   NEURON

A Resource of Cre Driver Lines for Genetic Targeting of GABAergic Neurons in Cerebral Cortex

(2011) Hiroki Taniguchi et al.   NEURON

Dense Inhibitory Connectivity in Neocortex

(2011) Elodie Fino et al.   NEURON

A synaptic organizing principle for cortical neuronal groups

(2011) R. Perin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Laminar Analysis of Excitatory Local Circuits in Vibrissal Motor and Sensory Cortical Areas

(2011) B. M. Hooks et al.   PLOS BIOLOGY

Number and Laminar Distribution of Neurons in a Thalamocortical Projection Column of Rat Vibrissal Cortex

(2010) Hanno S. Meyer et al.   CEREBRAL CORTEX

Dimensions of a Projection Column and Architecture of VPM and POm Axons in Rat Vibrissal Cortex

(2010) V. C. Wimmer et al.   CEREBRAL CORTEX

Channelrhodopsin as a tool to investigate synaptic transmission and plasticity

(2010) Philipp Schoenenberger et al.   EXPERIMENTAL PHYSIOLOGY

Detection of input sites in scanning photostimulation data based on spatial correlations

(2010) Michael H.K. Bendels et al.   JOURNAL OF NEUROSCIENCE METHODS

Lateral competition for cortical space by layer-specific horizontal circuits

(2010) Hillel Adesnik et al.   NATURE

Scanless two-photon excitation of channelrhodopsin-2

(2010) Eirini Papagiakoumou et al.   NATURE METHODS

The columnar and laminar organization of inhibitory connections to neocortical excitatory cells

(2010) Dennis Kätzel et al.   NATURE NEUROSCIENCE

Sublayer-specific microcircuits of corticospinal and corticostriatal neurons in motor cortex

(2010) Charles T Anderson et al.   NATURE NEUROSCIENCE

Ultrafast optogenetic control

(2010) Lisa A Gunaydin et al.   NATURE NEUROSCIENCE

Pathway-Specific Feedforward Circuits between Thalamus and Neocortex Revealed by Selective Optical Stimulation of Axons

(2010) Scott J. Cruikshank et al.   NEURON

Channelrhodopsin-2 Localised to the Axon Initial Segment

(2010) Matthew S. Grubb et al.   PLoS One

Two-photon single-cell optogenetic control of neuronal activity by sculpted light

(2010) B. K. Andrasfalvy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cholinergic Interneurons Control Local Circuit Activity and Cocaine Conditioning

(2010) I. B. Witten et al.   SCIENCE

Laminar Specificity of Functional Input to Distinct Types of Inhibitory Cortical Neurons

(2009) X. Xu et al.   JOURNAL OF NEUROSCIENCE

Robust Short-Latency Perisomatic Inhibition onto Neocortical Pyramidal Cells Detected by Laser-Scanning Photostimulation

(2009) J. Brill et al.   JOURNAL OF NEUROSCIENCE

Postsynaptic Mechanisms Govern the Differential Excitation of Cortical Neurons by Thalamic Inputs

(2009) C. Hull et al.   JOURNAL OF NEUROSCIENCE

The subcellular organization of neocortical excitatory connections

(2009) Leopoldo Petreanu et al.   NATURE

Intracortical circuits of pyramidal neurons reflect their long-range axonal targets

(2009) Solange P. Brown et al.   NATURE

Bi-stable neural state switches

(2009) André Berndt et al.   NATURE NEUROSCIENCE

Myosin-dependent targeting of transmembrane proteins to neuronal dendrites

(2009) Tommy L Lewis et al.   NATURE NEUROSCIENCE

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain

(2009) Linda Madisen et al.   NATURE NEUROSCIENCE

Two-photon excitation of channelrhodopsin-2 at saturation

(2009) J. P. Rickgauer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RuBi-Glutamate: Two-photon and visible-light photoactivation of neurons and dendritic spines

(2009) Elodie Fino   Frontiers in Neural Circuits

Three-Dimensional Mapping of Unitary Synaptic Connections by Two-Photon Macro Photolysis of Caged Glutamate

(2008) Masanori Matsuzaki et al.   JOURNAL OF NEUROPHYSIOLOGY

Circuit and Plasticity Defects in the Developing Somatosensory Cortex of Fmr1 Knock-Out Mice

(2008) I. Bureau et al.   JOURNAL OF NEUROSCIENCE

Direct measurement of somatic voltage clamp errors in central neurons

(2008) Stephen R Williams et al.   NATURE NEUROSCIENCE

Petilla terminology: nomenclature of features of GABAergic interneurons of the cerebral cortex

(2008)   NATURE REVIEWS NEUROSCIENCE