Ancestry-Specific Methylation Patterns in Admixed Offspring from an Experimental Coyote and Gray Wolf Cross

Gene Regulation and Speciation

(2017) Katya L. Mack et al.   TRENDS IN GENETICS

Genomic imprinting, disrupted placental expression, and speciation

(2016) Thomas D. Brekke et al.   EVOLUTION

Inbreeding effects on gene-specific DNA methylation among tissues of Chinook salmon

(2016) Clare J. Venney et al.   MOLECULAR ECOLOGY

Epigenetics in ecology and evolution: what we know and what we need to know

(2016) Koen J. F. Verhoeven et al.   MOLECULAR ECOLOGY

Sparse PCA corrects for cell type heterogeneity in epigenome-wide association studies

(2016) Elior Rahmani et al.   NATURE METHODS

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

(2016) Enis Afgan et al.   NUCLEIC ACIDS RESEARCH

Mutations in TBX18 Cause Dominant Urinary Tract Malformations via Transcriptional Dysregulation of Ureter Development

(2015) Asaf Vivante et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Factors influencing red wolf–coyote hybridization in eastern North Carolina, USA

(2015) Justin H. Bohling et al.   BIOLOGICAL CONSERVATION

A Flexible, Efficient Binomial Mixed Model for Identifying Differential DNA Methylation in Bisulfite Sequencing Data

(2015) Amanda J. Lea et al.   PLoS Genetics

The genetics of speciation: are complex incompatibilities easier to evolve?

(2014) C. Fraïsse et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Production of Hybrids between Western Gray Wolves and Western Coyotes

(2014) L. David Mech et al.   PLoS One

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

Fast Principal Component Analysis of Large-Scale Genome-Wide Data

(2014) Gad Abraham et al.   PLoS One

Association of Reduced Type IX Collagen Gene Expression in Human Osteoarthritic Chondrocytes With Epigenetic Silencing by DNA Hypermethylation

(2014) Kei Imagawa et al.   Arthritis & Rheumatology

BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data

(2013) Weilong Guo et al.   BMC GENOMICS

DNA methylation contributes to natural human variation

(2013) H. Heyn et al.   GENOME RESEARCH

WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013

(2013) Jing Wang et al.   NUCLEIC ACIDS RESEARCH

Spatial genetic and morphologic structure of wolves and coyotes in relation to environmental heterogeneity in aCanishybrid zone

(2012) John F. Benson et al.   MOLECULAR ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential DNA Methylation in Purified Human Blood Cells: Implications for Cell Lineage and Studies on Disease Susceptibility

(2012) Lovisa E. Reinius et al.   PLoS One

Evolution in coyotes (Canis latrans) in response to the megafaunal extinctions

(2012) J. A. Meachen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids

(2011) Bridgett M. vonHoldt et al.   GENOME RESEARCH

Coyote colonization of northern Virginia and admixture with Great Lakes wolves

(2011) Christine A. Bozarth et al.   JOURNAL OF MAMMALOGY

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Transgenerational Epigenetic Instability Is a Source of Novel Methylation Variants

(2011) R. J. Schmitz et al.   SCIENCE

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Genetic differentiation of eastern wolves in Algonquin Park despite bridging gene flow between coyotes and grey wolves

(2010) L Y Rutledge et al.   HEREDITY

The molecular evolutionary basis of species formation

(2010) Daven C. Presgraves   NATURE REVIEWS GENETICS

Rapid adaptive evolution of northeastern coyotes via hybridization with wolves

(2009) R. Kays et al.   Biology Letters

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Genetic Characterization of Hybrid Wolves across Ontario

(2009) Paul J. Wilson et al.   JOURNAL OF HEREDITY

TCF7L2variant genotypes and type 2 diabetes risk in Brazil: significant association, but not a significant tool for risk stratification in the general population

(2008) GF Marquezine et al.   BMC Medical Genetics

Changes to gene expression associated with hybrid speciation in plants: further insights from transcriptomic studies in Senecio

(2008) M. J Hegarty et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES