Genetic dissection of metabolite variation in Arabidopsis seeds: evidence for mQTL hotspots and a master regulatory locus of seed metabolism

A naturally occurring promoter polymorphism of the ArabidopsisFUM2gene causes expression variation, and is associated with metabolic and growth traits

(2016) David Riewe et al.   PLANT JOURNAL

An Integrative Genetic Study of Rice Metabolism, Growth and Stochastic Variation Reveals Potential C/N Partitioning Loci

(2016) Baohua Li et al.   Scientific Reports

Combined Use of Genome-Wide Association Data and Correlation Networks Unravels Key Regulators of Primary Metabolism in Arabidopsis thaliana

(2016) Si Wu et al.   PLoS Genetics

Identification and Mode of Inheritance of Quantitative Trait Loci for Secondary Metabolite Abundance in Tomato

(2015) Saleh Alseekh et al.   PLANT CELL

Genetic Determinants of the Network of Primary Metabolism and Their Relationships to Plant Performance in a Maize Recombinant Inbred Line Population

(2015) Weiwei Wen et al.   PLANT CELL

Combining Quantitative Genetics Approaches with Regulatory Network Analysis to Dissect the Complex Metabolism of the Maize Kernel

(2015) Weiwei Wen et al.   PLANT PHYSIOLOGY

Discovery of a novel amino acid racemase through exploration of natural variation inArabidopsis thaliana

(2015) Renee C. Strauch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Exploiting Natural Variation of Secondary Metabolism Identifies a Gene Controlling the Glycosylation Diversity of Dihydroxybenzoic Acids in Arabidopsis thaliana

(2014) X. Li et al.   GENETICS

Seed metabolomic study reveals significant metabolite variations and correlations among different soybean cultivars

(2014) Hong Lin et al.   Journal of Integrative Plant Biology

Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism

(2014) Wei Chen et al.   NATURE GENETICS

Hierarchical Nuclear and Cytoplasmic Genetic Architectures for Plant Growth and Defense within Arabidopsis

(2013) B. Joseph et al.   PLANT CELL

Genome-Wide Analysis of Branched-Chain Amino Acid Levels in Arabidopsis Seeds

(2013) R. Angelovici et al.   PLANT CELL

Whole-Genome Mapping of Agronomic and Metabolic Traits to Identify Novel Quantitative Trait Loci in Bread Wheat Grown in a Water-Limited Environment

(2013) C. B. Hill et al.   PLANT PHYSIOLOGY

Identifying Genotype-by-Environment Interactions in the Metabolism of Germinating Arabidopsis Seeds Using Generalized Genetical Genomics

(2013) R. V. L. Joosen et al.   PLANT PHYSIOLOGY

Genetic analysis of the metabolome exemplified using a rice population

(2013) L. Gong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant Nitrogen Assimilation and Use Efficiency

(2012) Guohua Xu et al.   Annual Review of Plant Biology

Expression variation in connected recombinant populations of Arabidopsis thaliana highlights distinct transcriptome architectures

(2012) Francisco A Cubillos et al.   BMC GENOMICS

Partial deficiency of isoleucine impairs root development and alters transcript levels of the genes involved in branched-chain amino acid and glucosinolate metabolism in Arabidopsis

(2012) Hailan Yu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Metabolite profiling and quantitative genetics of natural variation for flavonoids in Arabidopsis

(2012) Jean-Marc Routaboul et al.   JOURNAL OF EXPERIMENTAL BOTANY

A tyrosine aminotransferase involved in tocopherol synthesis in Arabidopsis

(2012) David Riewe et al.   PLANT JOURNAL

Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis

(2012) Fumio Matsuda et al.   PLANT JOURNAL

Untargeted Metabolic Quantitative Trait Loci Analyses Reveal a Relationship between Primary Metabolism and Potato Tuber Quality

(2012) N. Carreno-Quintero et al.   PLANT PHYSIOLOGY

Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize

(2012) C. Riedelsheimer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic Profiling of a Mapping Population Exposes New Insights in the Regulation of Seed Metabolism and Seed, Fruit, and Plant Relations

(2012) David Toubiana et al.   PLoS Genetics

Identification of enzymatic and regulatory genes of plant metabolism through QTL analysis in Arabidopsis

(2011) Yariv Brotman et al.   JOURNAL OF PLANT PHYSIOLOGY

Identification of Quantitative Trait Loci for Lipid Metabolism in Rice Seeds

(2011) Jie-Zheng Ying et al.   Molecular Plant

Elemental formula annotation of polar and lipophilic metabolites using13C,15N and34S isotope labelling, in combination with high-resolution mass spectrometry

(2011) Patrick Giavalisco et al.   PLANT JOURNAL

Chloroplast 2010: A Database for Large-Scale Phenotypic Screening of Arabidopsis Mutants

(2011) Y. Lu et al.   PLANT PHYSIOLOGY

Targeted Enhancement of Glutamate-to- -Aminobutyrate Conversion in Arabidopsis Seeds Affects Carbon-Nitrogen Balance and Storage Reserves in a Development-Dependent Manner

(2011) A. Fait et al.   PLANT PHYSIOLOGY

Quantitative trait loci involved in regulating seed oil composition in Arabidopsis thaliana and their evolutionary implications

(2011) Anushree Sanyal et al.   THEORETICAL AND APPLIED GENETICS

Combining Genome-Wide Association Mapping and Transcriptional Networks to Identify Novel Genes Controlling Glucosinolates in Arabidopsis thaliana

(2011) Eva K. F. Chan et al.   PLOS BIOLOGY

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Network Analysis of Enzyme Activities and Metabolite Levels and Their Relationship to Biomass in a Large Panel of Arabidopsis Accessions

(2010) R. Sulpice et al.   PLANT CELL

Genetic analysis of pathway regulation for enhancing branched-chain amino acid biosynthesis in plants

(2010) Hao Chen et al.   PLANT JOURNAL

A platform of high-density INDEL/CAPS markers for map-based cloning in Arabidopsis

(2010) Xianhui Hou et al.   PLANT JOURNAL

The Complex Genetic Architecture of the Metabolome

(2010) Eva K. F. Chan et al.   PLoS Genetics

Metabolomics for Functional Genomics, Systems Biology, and Biotechnology

(2009) Kazuki Saito et al.   Annual Review of Plant Biology

TargetSearch - a Bioconductor package for the efficient preprocessing of GC-MS metabolite profiling data

(2009) Álvaro Cuadros-Inostroza et al.   BMC BIOINFORMATICS

DNA LIGASE I exerts a maternal effect on seed development in Arabidopsis thaliana

(2009) S. Andreuzza et al.   DEVELOPMENT

System-wide molecular evidence for phenotypic buffering in Arabidopsis

(2009) Jingyuan Fu et al.   NATURE GENETICS

A Pivotal Role of the Basic Leucine Zipper Transcription Factor bZIP53 in the Regulation of Arabidopsis Seed Maturation Gene Expression Based on Heterodimerization and Protein Complex Formation

(2009) R. Alonso et al.   PLANT CELL

Identification of heterotic metabolite QTL inArabidopsis thalianaRIL and IL populations

(2009) Jan Lisec et al.   PLANT JOURNAL

A Model Selection Approach for the Identification of Quantitative Trait Loci in Experimental Crosses, Allowing Epistasis

(2008) A. Manichaikul et al.   GENETICS

Biochemical Networks and Epistasis Shape the Arabidopsis thaliana Metabolome

(2008) H. C. Rowe et al.   PLANT CELL

Mode of Inheritance of Primary Metabolic Traits in Tomato

(2008) N. Schauer et al.   PLANT CELL

New Connections across Pathways and Cellular Processes: Industrialized Mutant Screening Reveals Novel Associations between Diverse Phenotypes in Arabidopsis

(2008) Y. Lu et al.   PLANT PHYSIOLOGY

Structure and mechanism of inhibition of plant acetohydroxyacid synthase

(2008) Ronald G. Duggleby et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Sorting Signals, N-Terminal Modifications and Abundance of the Chloroplast Proteome

(2008) Boris Zybailov et al.   PLoS One

Extending the breadth of metabolite profiling by gas chromatography coupled to mass spectrometry

(2008) Oliver Fiehn   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

Metabolomics-assisted breeding: a viable option for crop improvement?

(2008) Alisdair R. Fernie et al.   TRENDS IN GENETICS

Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana

(2008) Joost JB Keurentjes et al.   GENOME BIOLOGY

Arabidopsis Branched-Chain Aminotransferase 3 Functions in Both Amino Acid and Glucosinolate Biosynthesis

(2007) T. Knill et al.   PLANT PHYSIOLOGY