Patterns of stress response and tolerance based on transcriptome profiling of rice crown tissue under zinc deficiency

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Ensembl Genomes 2016: more genomes, more complexity

(2015) Paul Julian Kersey et al.   NUCLEIC ACIDS RESEARCH

Expression of developmentally regulated plasma membrane polypeptide (DREPP2) in rice root tip and interaction with Ca2+/CaM complex and microtubule

(2015) Nana Yamada et al.   PROTOPLASMA

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Zinc-Use Efficiency in Upland Rice Genotypes

(2014) Nand Kumar Fageria et al.   COMMUNICATIONS IN SOIL SCIENCE AND PLANT ANALYSIS

Sugar signals and the control of plant growth and development

(2014) Jeroen Lastdrager et al.   JOURNAL OF EXPERIMENTAL BOTANY

CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation

(2014) S. Gao et al.   PLANT PHYSIOLOGY

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Zn uptake, translocation and grain Zn loading in rice (Oryza sativa L.) genotypes selected for Zn deficiency tolerance and high grain Zn

(2013) Somayanda M. Impa et al.   JOURNAL OF EXPERIMENTAL BOTANY

Rice Annotation Project Database (RAP-DB): An Integrative and Interactive Database for Rice Genomics

(2013) Hiroaki Sakai et al.   PLANT AND CELL PHYSIOLOGY

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Bioavailability of zinc and phosphorus in calcareous soils as affected by citrate exudation

(2012) Andreas Duffner et al.   PLANT AND SOIL

Characterization of Genes Involved in Cytokinin Signaling and Metabolism from Rice

(2012) Y.-C. Tsai et al.   PLANT PHYSIOLOGY

A Novel Rice Gene, NRR Responds to Macronutrient Deficiency and Regulates Root Growth

(2011) Yu-Man Zhang et al.   Molecular Plant

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Zinc deficiency-inducible OsZIP8 encodes a plasma membrane-localized zinc transporter in rice

(2010) Sichul Lee et al.   MOLECULES AND CELLS

Response to zinc deficiency of two rice lines with contrasting tolerance is determined by root growth maintenance and organic acid exudation rates, and not by zinc-transporter activity

(2010)   Widodo et al.   NEW PHYTOLOGIST

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

OsZIP5 is a plasma membrane zinc transporter in rice

(2010) Sichul Lee et al.   PLANT MOLECULAR BIOLOGY

An agar nutrient solution technique as a screening tool for tolerance to zinc deficiency and iron toxicity in rice

(2010) Yunxia Wang et al.   SOIL SCIENCE AND PLANT NUTRITION

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Adventitious root formation in rice requires OsGNOM1 and is mediated by the OsPINs family

(2009) Shiping Liu et al.   CELL RESEARCH

The Gibberellic Acid Stimulated-Like Gene Family in Maize and Its Role in Lateral Root Development

(2009) R. Zimmermann et al.   PLANT PHYSIOLOGY

Rice OsYSL15 Is an Iron-regulated Iron(III)-Deoxymugineic Acid Transporter Expressed in the Roots and Is Essential for Iron Uptake in Early Growth of the Seedlings

(2008) Haruhiko Inoue et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

OsGSR1is involved in crosstalk between gibberellins and brassinosteroids in rice

(2008) Li Wang et al.   PLANT JOURNAL

Deoxymugineic acid increases Zn translocation in Zn-deficient rice plants

(2008) Motofumi Suzuki et al.   PLANT MOLECULAR BIOLOGY