Direct Detection of Shigella in Stool Specimens by Use of a Metagenomic Approach

Investigating the Relatedness of Enteroinvasive Escherichia coli to Other E. coli and Shigella Isolates by Using Comparative Genomics

(2016) Tracy H. Hazen et al.   INFECTION AND IMMUNITY

Evaluation of Luminex xTAG Gastrointestinal Pathogen Panel Assay for Detection of Multiple Diarrheal Pathogens in Fecal Samples in Vietnam

(2016) Vu Thuy Duong et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Use of quantitative molecular diagnostic methods to identify causes of diarrhoea in children: a reanalysis of the GEMS case-control study

(2016) Jie Liu et al.   LANCET

Global, regional, and national life expectancy, all-cause mortality, and cause-specific mortality for 249 causes of death, 1980–2015: a systematic analysis for the Global Burden of Disease Study 2015

(2016) Haidong Wang et al.   LANCET

The genomic signatures of Shigella evolution, adaptation and geographical spread

(2016) Hao Chung The et al.   NATURE REVIEWS MICROBIOLOGY

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Fast and sensitive taxonomic classification for metagenomics with Kaiju

(2016) Peter Menzel et al.   Nature Communications

An evaluation of the accuracy and speed of metagenome analysis tools

(2016) Stinus Lindgreen et al.   Scientific Reports

Association Between Shigella Infection and Diarrhea Varies Based on Location and Age of Children

(2015) Brianna Lindsay et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers

(2015) Rachid Ounit et al.   BMC GENOMICS

Multicenter Evaluation of the BioFire FilmArray Gastrointestinal Panel for Etiologic Diagnosis of Infectious Gastroenteritis

(2015) Sarah N. Buss et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Defining the Phylogenomics of Shigella Species: a Pathway to Diagnostics

(2015) Jason W. Sahl et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Multicenter Evaluation of the BD Max Enteric Bacterial Panel PCR Assay for Rapid Detection of Salmonella spp., Shigella spp., Campylobacter spp. (C. jejuni and C. coli), and Shiga Toxin 1 and 2 Genes

(2015) S. M. Harrington et al.   JOURNAL OF CLINICAL MICROBIOLOGY

MetaPhlAn2 for enhanced metagenomic taxonomic profiling

(2015) Duy Tin Truong et al.   NATURE METHODS

Microbiologic Methods Utilized in the MAL-ED Cohort Study

(2014) Eric Houpt et al.   CLINICAL INFECTIOUS DISEASES

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

Survey of Culture, GoldenGate Assay, Universal Biosensor Assay, and 16S rRNA Gene Sequencing as Alternative Methods of Bacterial Pathogen Detection

(2013) B. Lindsay et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Quantitative PCR for Detection of Shigella Improves Ascertainment of Shigella Burden in Children with Moderate-to-Severe Diarrhea in Low-Income Countries

(2013) B. Lindsay et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Burden and aetiology of diarrhoeal disease in infants and young children in developing countries (the Global Enteric Multicenter Study, GEMS): a prospective, case-control study

(2013) Karen L Kotloff et al.   LANCET

Diagnostic Microbiologic Methods in the GEMS-1 Case/Control Study

(2012) Sandra Panchalingam et al.   CLINICAL INFECTIOUS DISEASES