Intranuclear and higher-order chromatin organization of the major histone gene cluster in breast cancer
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Intranuclear and higher-order chromatin organization of the major histone gene cluster in breast cancer
Authors
Keywords
-
Journal
JOURNAL OF CELLULAR PHYSIOLOGY
Volume 233, Issue 2, Pages 1278-1290
Publisher
Wiley
Online
2017-05-15
DOI
10.1002/jcp.25996
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Identifying Nuclear Matrix-Attached DNA Across the Genome
- (2017) Jason R. Dobson et al. JOURNAL OF CELLULAR PHYSIOLOGY
- Runx1 stabilizes the mammary epithelial cell phenotype and prevents epithelial to mesenchymal transition
- (2017) Deli Hong et al. Oncotarget
- Regulation of miRNA-29c and its downstream pathways in preneoplastic progression of triple-negative breast cancer
- (2017) Anjana Bhardwaj et al. Oncotarget
- The connection between BRG1, CTCF and topoisomerases at TAD boundaries
- (2017) A. Rasim Barutcu et al. Nucleus
- The connection between BRG1, CTCF and topoisomerases at TAD boundaries
- (2017) A. Rasim Barutcu et al. Nucleus
- RUNX1 contributes to higher-order chromatin organization and gene regulation in breast cancer cells
- (2016) A. Rasim Barutcu et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- TADtool: visual parameter identification for TAD-calling algorithms
- (2016) Kai Kruse et al. BIOINFORMATICS
- The 3D Genome as Moderator of Chromosomal Communication
- (2016) Job Dekker et al. CELL
- Insulators and domains of gene expression
- (2016) Tamer Ali et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- SMARCA4 regulates gene expression and higher-order chromatin structure in proliferating mammary epithelial cells
- (2016) A. Rasim Barutcu et al. GENOME RESEARCH
- Chromatin Domains: The Unit of Chromosome Organization
- (2016) Jesse R. Dixon et al. MOLECULAR CELL
- Enhancer–promoter interactions are encoded by complex genomic signatures on looping chromatin
- (2016) Sean Whalen et al. NATURE GENETICS
- deepTools2: a next generation web server for deep-sequencing data analysis
- (2016) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- Breaking TADs: How Alterations of Chromatin Domains Result in Disease
- (2016) Darío G. Lupiáñez et al. TRENDS IN GENETICS
- Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom
- (2016) Neva C. Durand et al. Cell Systems
- Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
- (2015) Darío G. Lupiáñez et al. CELL
- Comprehensive Molecular Portraits of Invasive Lobular Breast Cancer
- (2015) Giovanni Ciriello et al. CELL
- Chromosomes at Work: Organization of Chromosome Territories in the Interphase Nucleus
- (2015) Andrew J. Fritz et al. JOURNAL OF CELLULAR BIOCHEMISTRY
- C-ing the Genome: A Compendium of Chromosome Conformation Capture Methods to Study Higher-Order Chromatin Organization
- (2015) A. Rasim Barutcu et al. JOURNAL OF CELLULAR PHYSIOLOGY
- Tumor-Derived Cell Lines as Molecular Models of Cancer Pharmacogenomics
- (2015) A. Goodspeed et al. MOLECULAR CANCER RESEARCH
- CTCF/cohesin-binding sites are frequently mutated in cancer
- (2015) Riku Katainen et al. NATURE GENETICS
- Systematic enrichment analysis of potentially functional regions for 103 prostate cancer risk-associated loci
- (2015) Haitao Chen et al. PROSTATE
- CTCF establishes discrete functional chromatin domains at theHoxclusters during differentiation
- (2015) Varun Narendra et al. SCIENCE
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- Reactivation of Developmentally Silenced Globin Genes by Forced Chromatin Looping
- (2014) Wulan Deng et al. CELL
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- FLASH and NPAT positive but not Coilin positive Cajal bodies correlate with cell ploidy
- (2014) Lucilla Bongiorno-Borbone et al. CELL CYCLE
- Wide-scale alterations in interchromosomal organization in breast cancer cells: defining a network of interacting chromosomes
- (2014) Andrew J. Fritz et al. HUMAN MOLECULAR GENETICS
- A Conserved Interaction That Is Essential for the Biogenesis of Histone Locus Bodies
- (2014) Xiao-cui Yang et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Fidelity of Histone Gene Regulation Is Obligatory for Genome Replication and Stability
- (2014) P. N. Ghule et al. MOLECULAR AND CELLULAR BIOLOGY
- Cell Type Specific Alterations in Interchromosomal Networks across the Cell Cycle
- (2014) Andrew J. Fritz et al. PLoS Computational Biology
- Assembly of the SLIP1–SLBP Complex on Histone mRNA Requires Heterodimerization and Sequential Binding of SLBP Followed by SLIP1
- (2013) Nitin Bansal et al. BIOCHEMISTRY
- A Sequence in the Drosophila H3-H4 Promoter Triggers Histone Locus Body Assembly and Biosynthesis of Replication-Coupled Histone mRNAs
- (2013) Harmony R. Salzler et al. DEVELOPMENTAL CELL
- Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments
- (2013) V. C. Seitan et al. GENOME RESEARCH
- Chromatin Insulators: Linking Genome Organization to Cellular Function
- (2013) Jennifer E. Phillips-Cremins et al. MOLECULAR CELL
- Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
- (2013) Takashi Nagano et al. NATURE
- Mutational landscape and significance across 12 major cancer types
- (2013) Cyriac Kandoth et al. NATURE
- Epigenetic Reprogramming in Cancer
- (2013) M. L. Suva et al. SCIENCE
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Spatial Organization of the Mouse Genome and Its Role in Recurrent Chromosomal Translocations
- (2012) Yu Zhang et al. CELL
- Nuclear Aggregation of Olfactory Receptor Genes Governs Their Monogenic Expression
- (2012) E. Josephine Clowney et al. CELL
- Correlated alterations in genome organization, histone methylation, and DNA-lamin A/C interactions in Hutchinson-Gilford progeria syndrome
- (2012) R. P. McCord et al. GENOME RESEARCH
- GENCODE: The reference human genome annotation for The ENCODE Project
- (2012) J. Harrow et al. GENOME RESEARCH
- Hi–C: A comprehensive technique to capture the conformation of genomes
- (2012) Jon-Matthew Belton et al. METHODS
- The Prolyl Isomerase Pin1 Targets Stem-Loop Binding Protein (SLBP) To Dissociate the SLBP-Histone mRNA Complex Linking Histone mRNA Decay with SLBP Ubiquitination
- (2012) N. Krishnan et al. MOLECULAR AND CELLULAR BIOLOGY
- Close Proximity to Igh Is a Contributing Factor to AID-Mediated Translocations
- (2012) Pedro P. Rocha et al. MOLECULAR CELL
- The landscape of cancer genes and mutational processes in breast cancer
- (2012) Philip J. Stephens et al. NATURE
- Comprehensive molecular portraits of human breast tumours
- (2012) Daniel C. Koboldt et al. NATURE
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Spatial partitioning of the regulatory landscape of the X-inactivation centre
- (2012) Elphège P. Nora et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Identifying ChIP-seq enrichment using MACS
- (2012) Jianxing Feng et al. Nature Protocols
- Measuring reproducibility of high-throughput experiments
- (2011) Qunhua Li et al. Annals of Applied Statistics
- Enhancer and promoter interactions—long distance calls
- (2011) Ivan Krivega et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- The subnuclear organization of histone gene regulatory proteins and 3′ end processing factors of normal somatic and embryonic stem cells is compromised in selected human cancer cell types
- (2009) Prachi N. Ghule et al. JOURNAL OF CELLULAR PHYSIOLOGY
- FLASH degradation in response to UV-C results in histone locus bodies disruption and cell-cycle arrest
- (2009) L Bongiorno-Borbone et al. ONCOGENE
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
- Chromatin loops in gene regulation
- (2008) Stephan Kadauke et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Association between active genes occurs at nuclear speckles and is modulated by chromatin environment
- (2008) Jill M. Brown et al. JOURNAL OF CELL BIOLOGY
- Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
- (2008) Lars Guelen et al. NATURE
- Positional gene enrichment analysis of gene sets for high-resolution identification of overrepresented chromosomal regions
- (2008) K. De Preter et al. NUCLEIC ACIDS RESEARCH
- Staged assembly of histone gene expression machinery at subnuclear foci in the abbreviated cell cycle of human embryonic stem cells
- (2008) P. N. Ghule et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started