Regulatory signatures of liver regeneration distilled by integrative analysis of mRNA, histone methylation, and proteomics

A novel comparative pattern analysis approach identifies chronic alcohol mediated dysregulation of transcriptomic dynamics during liver regeneration

(2016) Lakshmi Kuttippurathu et al.   BMC GENOMICS

Repairing organs: lessons from intestine and liver

(2015) Helmuth Gehart et al.   TRENDS IN GENETICS

Enhancing S-adenosyl-methionine catabolism extends Drosophila lifespan

(2015) Fumiaki Obata et al.   Nature Communications

An integrated approach for the identification of USF1-centered transcriptional regulatory networks during liver regeneration

(2014) Huan Chen et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases

(2014) Li Shen et al.   BMC GENOMICS

Silencing of FOXM1 transcription factor expression by adenovirus-mediated RNA interference inhibits human hepatocellular carcinoma growth

(2014) T Chen et al.   CANCER GENE THERAPY

Cell-Type-Resolved Quantitative Proteomics of Murine Liver

(2014) S. Babak Azimifar et al.   Cell Metabolism

Identification of an epigenetic signature of early mouse liver regeneration that is disrupted by Zn-HDAC inhibition

(2014) Jiansheng Huang et al.   Epigenetics

NF-E2-related factor 2 promotes compensatory liver hypertrophy after portal vein branch ligation in mice

(2014) Keiichi Shirasaki et al.   HEPATOLOGY

The transcription repressors Bach2 and Bach1 promote B cell development by repressing the myeloid program

(2014) Ari Itoh-Nakadai et al.   NATURE IMMUNOLOGY

The CHR site: definition and genome-wide identification of a cell cycle transcriptional element

(2014) Gerd A. Müller et al.   NUCLEIC ACIDS RESEARCH

Signaling mechanisms of the epithelial-mesenchymal transition

(2014) D. M. Gonzalez et al.   Science Signaling

SPDEF Inhibits Prostate Carcinogenesis by Disrupting a Positive Feedback Loop in Regulation of the Foxm1 Oncogene

(2014) Xin-Hua Cheng et al.   PLoS Genetics

Liver regeneration by stem/progenitor cells

(2013) Tohru Itoh et al.   HEPATOLOGY

Methionine Adenosyltransferase II-dependent Histone H3K9 Methylation at theCOX-2Gene Locus

(2013) Yohei Kera et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Management of post-hepatectomy complications

(2013) Shan Jin   WORLD JOURNAL OF GASTROENTEROLOGY

Pin1 modulates p63α protein stability in regulation of cell survival, proliferation and tumor formation

(2013) C Li et al.   Cell Death & Disease

Quantitative and Qualitative Proteome Characteristics Extracted from In-Depth Integrated Genomics and Proteomics Analysis

(2013) Teck Yew Low et al.   Cell Reports

Ras-Induced Changes in H3K27me3 Occur after Those in Transcriptional Activity

(2013) Masaki Hosogane et al.   PLoS Genetics

Cancers with increasing incidence trends in the United States: 1999 through 2008

(2012) Edgar P. Simard et al.   CA-A CANCER JOURNAL FOR CLINICIANS

Portal Vein Embolization Before Liver Resection: A Systematic Review

(2012) K. P. van Lienden et al.   CARDIOVASCULAR AND INTERVENTIONAL RADIOLOGY

The MuvB complex sequentially recruits B-Myb and FoxM1 to promote mitotic gene expression

(2012) S. Sadasivam et al.   GENES & DEVELOPMENT

Liver regeneration

(2012) Nelson Fausto et al.   JOURNAL OF HEPATOLOGY

The Forkhead Transcription Factor FOXM1 Controls Cell Cycle-Dependent Gene Expression through an Atypical Chromatin Binding Mechanism

(2012) X. Chen et al.   MOLECULAR AND CELLULAR BIOLOGY

Forkhead Box M1 (FoxM1) Gene Is a New STAT3 Transcriptional Factor Target and Is Essential for Proliferation, Survival and DNA Repair of K562 Cell Line

(2012) André L. Mencalha et al.   PLoS One

Yes-associated protein regulation of adaptive liver enlargement and hepatocellular carcinoma development in mice

(2011) Marta A. Kowalik et al.   HEPATOLOGY

Methionine Adenosyltransferase II Serves as a Transcriptional Corepressor of Maf Oncoprotein

(2011) Yasutake Katoh et al.   MOLECULAR CELL

Deep proteome and transcriptome mapping of a human cancer cell line

(2011) N. Nagaraj et al.   Molecular Systems Biology

New insights into liver regeneration

(2011) H. Gilgenkrantz et al.   Clinics and Research in Hepatology and Gastroenterology

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

G9a/GLP complexes independently mediate H3K9 and DNA methylation to silence transcription

(2008) Makoto Tachibana et al.   EMBO JOURNAL

Deubiquitylation of histone H2A activates transcriptional initiation via trans-histone cross-talk with H3K4 di- and trimethylation

(2008) T. Nakagawa et al.   GENES & DEVELOPMENT

Hepatocyte-specific inhibitor-of-kappaB-kinase deletion triggers the innate immune response and promotes earlier cell proliferation during liver regeneration

(2008) Yann Malato et al.   HEPATOLOGY

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH