Geobiological feedbacks and the evolution of thermoacidophiles

Microbial community dynamics in Inferno Crater Lake, a thermally fluctuating geothermal spring

(2017) Laura Ward et al.   ISME Journal

A shale-hosted Cr isotope record of low atmospheric oxygen during the Proterozoic

(2016) Devon B. Cole et al.   GEOLOGY

Acidianus Tailed Spindle Virus: a New Archaeal Large Tailed Spindle Virus Discovered by Culture-Independent Methods

(2016) Rebecca A. Hochstein et al.   JOURNAL OF VIROLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Expanding the Limits of Thermoacidophily in the Archaeon Sulfolobus solfataricus by Adaptive Evolution

(2015) Samuel McCarthy et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling

(2015) Cindy J. Castelle et al.   CURRENT BIOLOGY

Novel viral genomes identified from six metagenomes reveal wide distribution of archaeal viruses and high viral diversity in terrestrial hot springs

(2015) Sóley Ruth Gudbergsdóttir et al.   ENVIRONMENTAL MICROBIOLOGY

Viral assemblage composition in Yellowstone acidic hot springs assessed by network analysis

(2015) Benjamin Bolduc et al.   ISME Journal

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Distribution of ether lipids and composition of the archaeal community in terrestrial geothermal springs: impact of environmental variables

(2014) Wei Xie et al.   ENVIRONMENTAL MICROBIOLOGY

Rooting the Domain Archaea by Phylogenomic Analysis Supports the Foundation of the New Kingdom Proteoarchaeota

(2014) Céline Petitjean et al.   Genome Biology and Evolution

The rise of oxygen in Earth’s early ocean and atmosphere

(2014) Timothy W. Lyons et al.   NATURE

rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development

(2014) Steven F. Stoddard et al.   NUCLEIC ACIDS RESEARCH

Low Mid-Proterozoic atmospheric oxygen levels and the delayed rise of animals

(2014) N. J. Planavsky et al.   SCIENCE

Molecular evidence for an active endogenous microbiome beneath glacial ice

(2013) Trinity L Hamilton et al.   ISME Journal

Niche specialization of novel Thaumarchaeota to oxic and hypoxic acidic geothermal springs of Yellowstone National Park

(2013) Jacob P Beam et al.   ISME Journal

Ultrafast Approximation for Phylogenetic Bootstrap

(2013) B. Q. Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Anoxic photochemical oxidation of siderite generates molecular hydrogen and iron oxides

(2013) J. D. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote

(2013) G. Schonknecht et al.   SCIENCE

Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2

(2012) Martin Wu et al.   BIOINFORMATICS

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park

(2012) Mark A Kozubal et al.   ISME Journal

Physiologic Versatility and Growth Flexibility as the Main Characteristics of a Novel Thermoacidophilic Acidianus Strain Isolated from Copahue Geothermal Area in Argentina

(2012) M. Alejandra Giaveno et al.   MICROBIAL ECOLOGY

Estimating divergence times in large molecular phylogenies

(2012) K. Tamura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Aerobic bacterial pyrite oxidation and acid rock drainage during the Great Oxidation Event

(2011) Kurt O. Konhauser et al.   NATURE

Thermodynamics and Kinetics of Sulfide Oxidation by Oxygen: A Look at Inorganically Controlled Reactions and Biologically Mediated Processes in the Environment

(2011) George W. Luther et al.   Frontiers in Microbiology

Iron-Oxidizing Bacteria: An Environmental and Genomic Perspective

(2010) David Emerson et al.   Annual Review of Microbiology

Quantifying inorganic sources of geochemical energy in hydrothermal ecosystems, Yellowstone National Park, USA

(2010) Everett L. Shock et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Enigmatic, ultrasmall, uncultivated Archaea

(2010) B. J. Baker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effect of O2concentrations onSulfolobus solfataricus P2

(2009) Gwénola Simon et al.   FEMS MICROBIOLOGY LETTERS

Fluctuations in Precambrian atmospheric oxygenation recorded by chromium isotopes

(2009) Robert Frei et al.   NATURE

The cycling and redox state of nitrogen in the Archaean ocean

(2009) Linda V. Godfrey et al.   Nature Geoscience

Relative Importance of H2 and H2S as Energy Sources for Primary Production in Geothermal Springs

(2008) S. D'Imperio et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Sulfur geochemistry of hydrothermal waters in Yellowstone National Park: IV Acid–sulfate waters

(2008) D. Kirk Nordstrom et al.   APPLIED GEOCHEMISTRY

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE

Population Genomic Analysis of Strain Variation in Leptospirillum Group II Bacteria Involved in Acid Mine Drainage Formation

(2008) Sheri L Simmons et al.   PLOS BIOLOGY