Transcriptome-Wide Identification and Characterization of Potato Circular RNAs in Response to Pectobacterium carotovorum Subspecies brasiliense Infection

Identification of circular RNAs and their targets during tomato fruit ripening

(2018) Junliang Yin et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Deep Circular RNA Sequencing Provides Insights into the Mechanism Underlying Grass Carp Reovirus Infection

(2017) Libo He et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Circles reshaping the RNA world: from waste to treasure

(2017) Jing Liu et al.   Molecular Cancer

The Phenylalanine Ammonia Lyase Gene LjPAL1 Is Involved in Plant Defense Responses to Pathogens and Plays Diverse Roles in Lotus japonicus-Rhizobium Symbioses

(2017) Yaping Chen et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Integrative analysis of circRNAs acting as ceRNAs involved in ethylene pathway in tomato

(2017) Yunxiang Wang et al.   PHYSIOLOGIA PLANTARUM

Identification and Functional Characterization of Tomato CircRNAs Derived from Genes Involved in Fruit Pigment Accumulation

(2017) Jinjuan Tan et al.   Scientific Reports

Identification of Circular RNAs in Kiwifruit and Their Species-Specific Response to Bacterial Canker Pathogen Invasion

(2017) Zupeng Wang et al.   Frontiers in Plant Science

Identification of Circular RNAs and Their Targets in Leaves of Triticum aestivum L. under Dehydration Stress

(2017) Yuexia Wang et al.   Frontiers in Plant Science

Deciphering the roles of circRNAs on chilling injury in tomato

(2016) Jinhua Zuo et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Genome-wide identification of potato long intergenic noncoding RNAs responsive to Pectobacterium carotovorum subspecies brasiliense infection

(2016) Stanford Kwenda et al.   BMC GENOMICS

Transcriptional Regulation of Pattern-Triggered Immunity in Plants

(2016) Bo Li et al.   Cell Host & Microbe

Foxo3 circular RNA retards cell cycle progression via forming ternary complexes with p21 and CDK2

(2016) William W. Du et al.   NUCLEIC ACIDS RESEARCH

Effects ofPHENYLALANINE AMMONIA LYASE(PAL) knockdown on cell wall composition, biomass digestibility, and biotic and abiotic stress responses inBrachypodium

(2015) Cynthia L. Cass et al.   JOURNAL OF EXPERIMENTAL BOTANY

Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed

(2015) Agnieszka Rybak-Wolf et al.   MOLECULAR CELL

Widespread noncoding circular RNAs in plants

(2015) Chu-Yu Ye et al.   NEW PHYTOLOGIST

High-throughput sequencing reveals differential expression of miRNAs in tomato inoculated with Phytophthora infestans

(2015) Yushi Luan et al.   PLANTA

Transcriptome-wide investigation of circular RNAs in rice

(2015) Tingting Lu et al.   RNA

Recent advances in potato genomics, transcriptomics, and transgenicsunder drought and heat stresses: a review

(2015) Emre AKSOY et al.   TURKISH JOURNAL OF BOTANY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Identification of microRNAs in six solanaceous plants and their potential link with phosphate and mycorrhizal signaling

(2014) Mian Gu et al.   Journal of Integrative Plant Biology

Plant PRRs and the Activation of Innate Immune Signaling

(2014) Alberto P. Macho et al.   MOLECULAR CELL

Circular RNA Is Expressed across the Eukaryotic Tree of Life

(2014) Peter L. Wang et al.   PLoS One

Efficient backsplicing produces translatable circular mRNAs

(2014) Yang Wang et al.   RNA

Identification and functional analysis of new conserved microRNAs and their targets in potato (Solanum tuberosum L.)

(2014) Muhammad DIN et al.   TURKISH JOURNAL OF BOTANY

The cuticle and plant defense to pathogens

(2014) Mario Serrano et al.   Frontiers in Plant Science

Regulation of secondary wall synthesis and cell death by NAC transcription factors in the monocot Brachypodium distachyon

(2013) Elene R. Valdivia et al.   JOURNAL OF EXPERIMENTAL BOTANY

Circular Intronic Long Noncoding RNAs

(2013) Yang Zhang et al.   MOLECULAR CELL

Circular RNAs are a large class of animal RNAs with regulatory potency

(2013) Sebastian Memczak et al.   NATURE

Snakemake--a scalable bioinformatics workflow engine

(2012) J. Koster et al.   BIOINFORMATICS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Genome sequence and analysis of the tuber crop potato

(2011) Xun Xu et al.   NATURE

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Gene Coexpression Network Alignment and Conservation of Gene Modules between Two Grass Species: Maize and Rice

(2011) S. P. Ficklin et al.   PLANT PHYSIOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Infection of Arabidopsis thaliana by Phytophthora parasitica and identification of variation in host specificity

(2010) YAN WANG et al.   MOLECULAR PLANT PATHOLOGY

Ethylene Signaling Regulates Accumulation of the FLS2 Receptor and Is Required for the Oxidative Burst Contributing to Plant Immunity

(2010) Sophia Mersmann et al.   PLANT PHYSIOLOGY

Pectobacterium carotovorum subsp. brasiliensis causing blackleg on potatoes in South Africa

(2009) Johanna J. van der Merwe et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

The multifaceted role of ABA in disease resistance

(2009) Jurriaan Ton et al.   TRENDS IN PLANT SCIENCE

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Pattern-recognition receptors in plant innate immunity

(2008) Cyril Zipfel   CURRENT OPINION IN IMMUNOLOGY