Genomic signatures of paleodrainages in a freshwater fish along the southeastern coast of Brazil: genetic structure reflects past riverine properties

Multispecies coalescent delimits structure, not species

(2017) Jeet Sukumaran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The architecture of river networks can drive the evolutionary dynamics of aquatic populations

(2016) Andréa T. Thomaz et al.   EVOLUTION

Lessons from the fish: a multi-species analysis reveals common processes underlying similar species-genetic diversity correlations

(2016) Lisa Fourtune et al.   FRESHWATER BIOLOGY

Contrasting support for alternative models of genomic variation based on microhabitat preference: species-specific effects of climate change in alpine sedges

(2016) Rob Massatti et al.   MOLECULAR ECOLOGY

Toward a paradigm shift in comparative phylogeography driven by trait-based hypotheses

(2016) Anna Papadopoulou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic tests of the species-pump hypothesis: Recent island connectivity cycles drive population divergence but not speciation in Caribbean crickets across the Virgin Islands

(2015) Anna Papadopoulou et al.   EVOLUTION

Bayesian species delimitation combining multiple genes and traits in a unified framework

(2015) Claudia Solís-Lemus et al.   EVOLUTION

Fine-scale habitat preferences influence within-river population connectivity: a case-study using two sympatric New ZealandGalaxiasfish species

(2015) Jonathan M. Waters et al.   FRESHWATER BIOLOGY

Testing the effect of palaeodrainages versus habitat stability on genetic divergence in riverine systems: study of a Neotropical fish of the Brazilian coastal Atlantic Forest

(2015) Andréa T. Thomaz et al.   JOURNAL OF BIOGEOGRAPHY

Evolutionary processes driving spatial patterns of intraspecific genetic diversity in river ecosystems

(2015) I. Paz-Vinas et al.   MOLECULAR ECOLOGY

Clumpak : a program for identifying clustering modes and packaging population structure inferences across K

(2015) Naama M. Kopelman et al.   Molecular Ecology Resources

The Species versus Subspecies Conundrum: Quantitative Delimitation from Integrating Multiple Data Types within a Single Bayesian Approach in Hercules Beetles

(2015) Jen-Pan Huang et al.   SYSTEMATIC BIOLOGY

Near-global freshwater-specific environmental variables for biodiversity analyses in 1 km resolution

(2015) Sami Domisch et al.   Scientific Data

Global imprint of historical connectivity on freshwater fish biodiversity

(2014) Murilo S. Dias et al.   ECOLOGY LETTERS

MICROHABITAT DIFFERENCES IMPACT PHYLOGEOGRAPHIC CONCORDANCE OF CODISTRIBUTED SPECIES: GENOMIC EVIDENCE IN MONTANE SEDGES (CAREXL.) FROM THE ROCKY MOUNTAINS

(2014) Rob Massatti et al.   EVOLUTION

A new species of the characid genus Hollandichthys Eigenmann from coastal rivers of southern Brazil (Teleostei: Characiformes) with a discussion on the diagnosis of the genus

(2014) Vinicius A. Bertaco et al.   Neotropical Ichthyology

Unforeseen Consequences of Excluding Missing Data from Next-Generation Sequences: Simulation Study of RAD Sequences

(2014) Huateng Huang et al.   SYSTEMATIC BIOLOGY

INTEGRATIVE TESTING OF HOW ENVIRONMENTS FROM THE PAST TO THE PRESENT SHAPE GENETIC STRUCTURE ACROSS LANDSCAPES

(2013) Qixin He et al.   EVOLUTION

The role of continental shelf width in determining freshwater phylogeographic patterns in south-eastern Australian pygmy perches (Teleostei: Percichthyidae)

(2013) Peter J. Unmack et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Evolutionary Drivers of Diversification and Distribution of a Southern Temperate Stream Fish Assemblage: Testing the Role of Historical Isolation and Spatial Range Expansion

(2013) Albert Chakona et al.   PLoS One

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

Goldilocks Meets Santa Rosalia: An Ephemeral Speciation Model Explains Patterns of Diversification Across Time Scales

(2012) Erica Bree Rosenblum et al.   Evolutionary Biology

Patterns and processes of global riverine fish endemism

(2012) Pablo A. Tedesco et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Genome-wide association genetics of an adaptive trait in lodgepole pine

(2012) THOMAS L. PARCHMAN et al.   MOLECULAR ECOLOGY

fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios

(2011) Laurent Excoffier et al.   BIOINFORMATICS

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Speciation Has a Spatial Scale That Depends on Levels of Gene Flow

(2010) Yael Kisel et al.   AMERICAN NATURALIST

Colonization history of the Swiss Rhine basin by the bullhead (Cottus gobio): inference under a Bayesian spatially explicit framework

(2010) SAMUEL NEUENSCHWANDER et al.   MOLECULAR ECOLOGY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

The phylogenetic placement of Hollandichthys Eigenmann 1909 (Teleostei: Characidae) and related genera

(2010) Andréa T. Thomaz et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Evolution of the mutation rate

(2010) Michael Lynch   TRENDS IN GENETICS

The Maintenance of Genetic Variation Due to Asymmetric Gene Flow in Dendritic Metapopulations

(2009) Michael B. Morrissey et al.   AMERICAN NATURALIST

Statistical Phylogeography

(2009) L. Lacey Knowles   Annual Review of Ecology Evolution and Systematics