Deep experimental profiling of microRNA diversity, deployment, and evolution across theDrosophilagenus

Repeated Duplication of Argonaute2 Is Associated with Strong Selection and Testis Specialization in Drosophila

(2016) S. H. Lewis et al.   GENETICS

FlyBase at 25: looking to the future

(2016) L. Sian Gramates et al.   NUCLEIC ACIDS RESEARCH

Selective Suppression of the Splicing-Mediated MicroRNA Pathway by the Terminal Uridyltransferase Tailor

(2015) Diane Bortolamiol-Becet et al.   MOLECULAR CELL

Uridylation of RNA Hairpins by Tailor Confines the Emergence of MicroRNAs in Drosophila

(2015) Madalena M. Reimão-Pinto et al.   MOLECULAR CELL

A deeply conserved, noncanonical miRNA hosted by ribosomal DNA

(2015) Li-Ling Chak et al.   RNA

MicroRNA-encoded behavior in Drosophila

(2015) Joao Picao-Osorio et al.   SCIENCE

Analysis of Nearly One Thousand Mammalian Mirtrons Reveals Novel Features of Dicer Substrates

(2015) Jiayu Wen et al.   PLoS Computational Biology

Homeotic Function of Drosophila Bithorax-Complex miRNAs Mediates Fertility by Restricting Multiple Hox Genes and TALE Cofactors in the CNS

(2014) Daniel L. Garaulet et al.   DEVELOPMENTAL CELL

Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines

(2014) J. Wen et al.   GENOME RESEARCH

Diverse modes of evolutionary emergence and flux of conserved microRNA clusters

(2014) Jaaved Mohammed et al.   RNA

Adaptive evolution of testis-specific, recently evolved, clustered miRNAs inDrosophila

(2014) Jaaved Mohammed et al.   RNA

New MicroRNAs in Drosophila—Birth, Death and Cycles of Adaptive Evolution

(2014) Yang Lyu et al.   PLoS Genetics

High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes

(2013) Z. Shi et al.   GENOME RESEARCH

Identification and annotation of small RNA genes using ShortStack

(2013) Saima Shahid et al.   METHODS

Structure, evolution and function of the bi-directionally transcribed iab-4/iab-8 microRNA locus in arthropods

(2013) Jerome H. L. Hui et al.   NUCLEIC ACIDS RESEARCH

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

The impact of age, biogenesis, and genomic clustering on Drosophila microRNA evolution

(2013) J. Mohammed et al.   RNA

A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence

(2012) T. T. Hu et al.   GENOME RESEARCH

Birth and expression evolution of mammalian microRNA genes

(2012) J. Meunier et al.   GENOME RESEARCH

Recombination Modulates How Selection Affects Linked Sites in Drosophila

(2012) Suzanne E. McGaugh et al.   PLOS BIOLOGY

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

Alternative miRNA Biogenesis Pathways and the Interpretation of Core miRNA Pathway Mutants

(2011) Jr-Shiuan Yang et al.   MOLECULAR CELL

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

A Drosophila genetic screen yields allelic series of core microRNA biogenesis factors and reveals post-developmental roles for microRNAs

(2011) P. Smibert et al.   RNA

Vive la différence: biogenesis and evolution of microRNAs in plants and animals

(2011) Michael J Axtell et al.   GENOME BIOLOGY

Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence

(2010) E. Berezikov et al.   GENOME RESEARCH

MicroRNA Biogenesis via Splicing and Exosome-Mediated Trimming in Drosophila

(2010) Alex S. Flynt et al.   MOLECULAR CELL

Ancient animal microRNAs and the evolution of tissue identity

(2010) Foteini Christodoulou et al.   NATURE

Posttranscriptional Crossregulation between Drosha and DGCR8

(2009) Jinju Han et al.   CELL

Repertoire and evolution of miRNA genes in four divergent nematode species

(2009) E. de Wit et al.   GENOME RESEARCH

Evolutionary flux of canonical microRNAs and mirtrons in Drosophila

(2009) Eugene Berezikov et al.   NATURE GENETICS

Fast Statistical Alignment

(2009) Robert K. Bradley et al.   PLoS Computational Biology

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Temporal Reciprocity of miRNAs and Their Targets during the Maternal-to-Zygotic Transition in Drosophila

(2008) Natascha Bushati et al.   CURRENT BIOLOGY

Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci

(2008) D. M. Tyler et al.   GENES & DEVELOPMENT

Adaptive Evolution of Newly Emerged Micro-RNA Genes in Drosophila

(2008) J. Lu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals

(2008) Andrew Grimson et al.   NATURE

The birth and death of microRNA genes in Drosophila

(2008) Jian Lu et al.   NATURE GENETICS

Biological principles of microRNA-mediated regulation: shared themes amid diversity

(2008) Alex S. Flynt et al.   NATURE REVIEWS GENETICS