Identification of protein features encoded by alternative exons using Exon Ontology

ProtAnnot: an App for Integrated Genome Browser to display how alternative splicing and transcription affect proteins

(2016) Tarun Mall et al.   BIOINFORMATICS

Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing

(2016) Xinping Yang et al.   CELL

Large-scale analysis of genome and transcriptome alterations in multiple tumors unveils novel cancer-relevant splicing networks

(2016) Endre Sebestyén et al.   GENOME RESEARCH

Determination of a Comprehensive Alternative Splicing Regulatory Network and Combinatorial Regulation by Key Factors during the Epithelial-to-Mesenchymal Transition

(2016) Yueqin Yang et al.   MOLECULAR AND CELLULAR BIOLOGY

Digesting the Expanding Mechanisms of Autophagy

(2016) Nicholas T. Ktistakis et al.   TRENDS IN CELL BIOLOGY

Ubiquitin-Dependent And Independent Signals In Selective Autophagy

(2016) Aliaksandr Khaminets et al.   TRENDS IN CELL BIOLOGY

Mechanisms and Regulation of Alternative Pre-mRNA Splicing

(2015) Yeon Lee et al.   Annual Review of Biochemistry

PPIXpress: construction of condition-specific protein interaction networks based on transcript expression

(2015) Thorsten Will et al.   BIOINFORMATICS

IIIDB: a database for isoform-isoform interactions and isoform network modules

(2015) Yu-Ting Tseng et al.   BMC GENOMICS

The pathogenicity of splicing defects: mechanistic insights into pre-mRNA processing inform novel therapeutic approaches

(2015) E. Daguenet et al.   EMBO REPORTS

Functional roles of transiently and intrinsically disordered regions within proteins

(2015) Vladimir N. Uversky   FEBS Journal

Genome-Wide Identification of Fas/CD95 Alternative Splicing Regulators Reveals Links with Iron Homeostasis

(2015) J. Ramón Tejedor et al.   MOLECULAR CELL

APPRIS WebServer and WebServices

(2015) Jose Manuel Rodriguez et al.   NUCLEIC ACIDS RESEARCH

dbPTM 2016: 10-year anniversary of a resource for post-translational modification of proteins

(2015) Kai-Yao Huang et al.   NUCLEIC ACIDS RESEARCH

Alternative mRNA transcription, processing, and translation: insights from RNA sequencing

(2015) Eleonora de Klerk et al.   TRENDS IN GENETICS

MIsoMine: a genome-scale high-resolution data portal of expression, function and networks at the splice isoform level in the mouse

(2015) Hong-Dong Li et al.   Database-The Journal of Biological Databases and Curation

Functional roles of alternative splicing factors in human disease

(2015) Benjamin Cieply et al.   Wiley Interdisciplinary Reviews-RNA

Intrinsically Disordered Proteins and Intrinsically Disordered Protein Regions

(2014) Christopher J. Oldfield et al.   Annual Review of Biochemistry

Binding Rubicon to cross the Rubicon

(2014) Kohichi Matsunaga et al.   Autophagy

Emerging functions of alternative splicing coupled with nonsense-mediated decay

(2014) Fursham M. Hamid et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

A Global Regulatory Mechanism for Activating an Exon Network Required for Neurogenesis

(2014) Bushra Raj et al.   MOLECULAR CELL

ProteomeScout: a repository and analysis resource for post-translational modifications and proteins

(2014) Matthew K. Matlock et al.   NUCLEIC ACIDS RESEARCH

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

The InterPro protein families database: the classification resource after 15 years

(2014) Alex Mitchell et al.   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

The emerging era of genomic data integration for analyzing splice isoform function

(2014) Hong-Dong Li et al.   TRENDS IN GENETICS

Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism

(2014) Roser Corominas et al.   Nature Communications

Exosomes and Autophagy: Coordinated Mechanisms for the Maintenance of Cellular Fitness

(2014) Francesc Baixauli et al.   Frontiers in Immunology

The impact of splicing on protein domain architecture

(2013) Sara Light et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Alternative splicing of intrinsically disordered regions and rewiring of protein interactions

(2013) Marija Buljan et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Endothelial, epithelial, and fibroblast cells exhibit specific splicing programs independently of their tissue of origin

(2013) P. Mallinjoud et al.   GENOME RESEARCH

The LC3 interactome at a glance

(2013) P. Wild et al.   JOURNAL OF CELL SCIENCE

The autophagosome: origins unknown, biogenesis complex

(2013) Christopher A. Lamb et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

(2013) Sandra Orchard et al.   NUCLEIC ACIDS RESEARCH

The Ddx5 and Ddx17 RNA helicases are cornerstones in the complex regulatory array of steroid hormone-signaling pathways

(2013) Samaan Samaan et al.   NUCLEIC ACIDS RESEARCH

Alternative cleavage and polyadenylation: the long and short of it

(2013) Bin Tian et al.   TRENDS IN BIOCHEMICAL SCIENCES

Ste20-like kinase SLK, at the crossroads

(2013) Khalid N. Al-Zahrani et al.   Cell Adhesion & Migration

Distinct Types of Disorder in the Human Proteome: Functional Implications for Alternative Splicing

(2013) Recep Colak et al.   PLoS Computational Biology

The role of ALFY in selective autophagy

(2012) P Isakson et al.   CELL DEATH AND DIFFERENTIATION

Function of alternative splicing

(2012) Olga Kelemen et al.   GENE

RBFOX2 Is an Important Regulator of Mesenchymal Tissue-Specific Splicing in both Normal and Cancer Tissues

(2012) J. P. Venables et al.   MOLECULAR AND CELLULAR BIOLOGY

Tissue-Specific Alternative Splicing Remodels Protein-Protein Interaction Networks

(2012) Jonathan D. Ellis et al.   MOLECULAR CELL

Tissue-Specific Splicing of Disordered Segments that Embed Binding Motifs Rewires Protein Interaction Networks

(2012) Marija Buljan et al.   MOLECULAR CELL

Splicing switch of an epigenetic regulator by RNA helicases promotes tumor-cell invasiveness

(2012) Etienne Dardenne et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Linear motifs confer functional diversity onto splice variants

(2012) Robert J. Weatheritt et al.   NUCLEIC ACIDS RESEARCH

D2P2: database of disordered protein predictions

(2012) Matt E. Oates et al.   NUCLEIC ACIDS RESEARCH

dbOGAP - An Integrated Bioinformatics Resource for Protein O-GlcNAcylation

(2011) Jinlian Wang et al.   BMC BIOINFORMATICS

The Origins, Evolution, and Functional Potential of Alternative Splicing in Vertebrates

(2011) J. M. Mudge et al.   MOLECULAR BIOLOGY AND EVOLUTION

PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse

(2011) P. V. Hornbeck et al.   NUCLEIC ACIDS RESEARCH

Binary classification of protein molecules into intrinsically disordered and ordered segments

(2011) Satoshi Fukuchi et al.   BMC STRUCTURAL BIOLOGY

Evolution of the Sequence Ontology terms and relationships

(2010) Christopher J. Mungall et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Expansion of the eukaryotic proteome by alternative splicing

(2010) Timothy W. Nilsen et al.   NATURE

Phospho.ELM: a database of phosphorylation sites--update 2011

(2010) H. Dinkel et al.   NUCLEIC ACIDS RESEARCH

Alternative mRNA splicing creates transcripts encoding soluble proteins from mostLILRgenes

(2009) Des C. Jones et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

mTOR and Akt Signaling in Cancer: SGK Cycles In

(2008) Alex Toker   MOLECULAR CELL

The PSI-MOD community standard for representation of protein modification data

(2008) Luisa Montecchi-Palazzi et al.   NATURE BIOTECHNOLOGY