Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation

Allele-Specific Expression Analysis Does Not Support Sex Chromosome Inactivation on the Chicken Z Chromosome

(2017) Qiong Wang et al.   Genome Biology and Evolution

Convergent origination of aDrosophila-like dosage compensation mechanism in a reptile lineage

(2017) Ray Marin et al.   GENOME RESEARCH

Avian W and mammalian Y chromosomes convergently retained dosage-sensitive regulators

(2017) Daniel W Bellott et al.   NATURE GENETICS

Sex and age differences in the expression of liver microRNAs during the life span of F344 rats

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The transcriptional architecture of phenotypic dimorphism

(2017) Judith E. Mank   Nature Ecology & Evolution

Sex-Biased Gene Expression

(2016) Sonja Grath et al.   Annual Review of Genetics

Compensation of Dosage-Sensitive Genes on the Chicken Z Chromosome

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OUP accepted manuscript

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Ensembl 2017

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A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome

(2015) Bastian Fromm et al.   Annual Review of Genetics

Bias in microRNA functional enrichment analysis

(2015) Thomas Bleazard et al.   BIOINFORMATICS

Escape of X-linked miRNA genes from meiotic sex chromosome inactivation

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A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing

(2015) Richard O. Prum et al.   NATURE

Towards a molecular understanding of microRNA-mediated gene silencing

(2015) Stefanie Jonas et al.   NATURE REVIEWS GENETICS

Sexual selection drives evolution and rapid turnover of male gene expression

(2015) Peter W. Harrison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The human transcriptome across tissues and individuals

(2015) M. Mele et al.   SCIENCE

Identification of Ohnolog Genes Originating from Whole Genome Duplication in Early Vertebrates, Based on Synteny Comparison across Multiple Genomes

(2015) Param Priya Singh et al.   PLoS Computational Biology

Analysis of Nearly One Thousand Mammalian Mirtrons Reveals Novel Features of Dicer Substrates

(2015) Jiayu Wen et al.   PLoS Computational Biology

Silencing of X-Linked MicroRNAs by Meiotic Sex Chromosome Inactivation

(2015) Hélène Royo et al.   PLoS Genetics

Predicting effective microRNA target sites in mammalian mRNAs

(2015) Vikram Agarwal et al.   eLife

Age and sex differences in kidney microRNA expression during the life span of F344 rats

(2015) Joshua C Kwekel et al.   Biology of Sex Differences

Addressing Bias in Small RNA Library Preparation for Sequencing: A New Protocol Recovers MicroRNAs that Evade Capture by Current Methods

(2015) Jeanette Baran-Gale et al.   Frontiers in Genetics

A Genome-Wide Survey of Sexually Dimorphic Expression of Drosophila miRNAs Identifies the Steroid Hormone-Induced miRNA let-7 as a Regulator of Sexual Identity

(2014) D. Fagegaltier et al.   GENETICS

Origins and functional evolution of Y chromosomes across mammals

(2014) Diego Cortez et al.   NATURE

The evolution of lncRNA repertoires and expression patterns in tetrapods

(2014) Anamaria Necsulea et al.   NATURE

Regulation of microRNA biogenesis

(2014) Minju Ha et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Sex differences in microRNA expression during developmentin rat cortex

(2014) Stephanie J. Murphy et al.   NEUROCHEMISTRY INTERNATIONAL

Two miRNA clusters, miR-34b/c and miR-449, are essential for normal brain development, motile ciliogenesis, and spermatogenesis

(2014) J. Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sex-biased expression of microRNAs in Drosophila melanogaster

(2014) A. Marco   Open Biology

Conserved microRNA editing in mammalian evolution, development and disease

(2014) Maria Warnefors et al.   GENOME BIOLOGY

Influence of sex differences on microRNA gene regulation in disease

(2014) Salil Sharma et al.   Biology of Sex Differences

miRNA regulated pathways in late stage murine lung development

(2013) Sana Mujahid et al.   BMC DEVELOPMENTAL BIOLOGY

Identification of differentially expressed microRNAs across the developing human brain

(2013) M N Ziats et al.   MOLECULAR PSYCHIATRY

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Cellular Source and Mechanisms of High Transcriptome Complexity in the Mammalian Testis

(2013) Magali Soumillon et al.   Cell Reports

Independent Evolution of Transcriptional Inactivation on Sex Chromosomes in Birds and Mammals

(2013) Alexandra M. Livernois et al.   PLoS Genetics

RNA sequencing reveals sexually dimorphic gene expression before gonadal differentiation in chicken and allows comprehensive annotation of the W-chromosome

(2013) Katie L Ayers et al.   GENOME BIOLOGY

Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression

(2012) Guan-Zheng Luo et al.   BMC GENOMICS

Birth and expression evolution of mammalian microRNA genes

(2012) J. Meunier et al.   GENOME RESEARCH

miRNAs and estrogen action

(2012) Carolyn M. Klinge   TRENDS IN ENDOCRINOLOGY AND METABOLISM

Mechanisms and Evolutionary Patterns of Mammalian and Avian Dosage Compensation

(2012) Philippe Julien et al.   PLOS BIOLOGY

Sex differences in microRNA regulation of gene expression: no smoke, just miRs

(2012) Christopher P Morgan et al.   Biology of Sex Differences

Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain

(2011) Preethi H Gunaratne et al.   BMC GENOMICS

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

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Tamoxifen downregulation of miR-451 increases 14-3-3ζ and promotes breast cancer cell survival and endocrine resistance

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Regulation of microRNA expression and function by nuclear receptor signaling

(2011) Zhihong Yang et al.   Cell and Bioscience

Mammalian microRNAs: experimental evaluation of novel and previously annotated genes

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Sex bias and dosage compensation in the zebra finch versus chicken genomes: General and specialized patterns among birds

(2010) Y. Itoh et al.   GENOME RESEARCH

Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries

(2010) M. J.L. de Hoon et al.   GENOME RESEARCH

A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness

(2010) A. M. Burroughs et al.   GENOME RESEARCH

Unbiased, Genome-Wide In Vivo Mapping of Transcriptional Regulatory Elements Reveals Sex Differences in Chromatin Structure Associated with Sex-Specific Liver Gene Expression

(2010) G. Ling et al.   MOLECULAR AND CELLULAR BIOLOGY

Ontogenetic Complexity of Sexual Dimorphism and Sex-Specific Selection

(2010) J. E. Mank et al.   MOLECULAR BIOLOGY AND EVOLUTION

Somatic sex identity is cell autonomous in the chicken

(2010) D. Zhao et al.   NATURE

Conserved vertebrate mir-451 provides a platform for Dicer-independent, Ago2-mediated microRNA biogenesis

(2010) J.-S. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sexually Dimorphic MicroRNA Expression During Chicken Embryonic Gonadal Development1

(2009) Stephanie C. Bannister et al.   BIOLOGY OF REPRODUCTION

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Rapid evolution of mammalian X-linked testis microRNAs

(2009) Xuejiang Guo et al.   BMC GENOMICS

Sex-different and growth hormone-regulated expression of microRNA in rat liver

(2009) Louisa Cheung et al.   BMC MOLECULAR BIOLOGY

Many X-linked microRNAs escape meiotic sex chromosome inactivation

(2009) Rui Song et al.   NATURE GENETICS

Estradiol-regulated microRNAs control estradiol response in breast cancer cells

(2009) Poornima Bhat-Nakshatri et al.   NUCLEIC ACIDS RESEARCH

The estrogen receptor- -induced microRNA signature regulates itself and its transcriptional response

(2009) L. Castellano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Highly Dynamic and Sex-Specific Expression of microRNAs During Early ES Cell Differentiation

(2009) Constance Ciaudo et al.   PLoS Genetics

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Chromatin structure analyses identify miRNA promoters

(2008) F. Ozsolak et al.   GENES & DEVELOPMENT

All dosage compensation is local: Gene-by-gene regulation of sex-biased expression on the chicken Z chromosome

(2008) J E Mank et al.   HEREDITY

The impact of microRNAs on protein output

(2008) Daehyun Baek et al.   NATURE

Widespread changes in protein synthesis induced by microRNAs

(2008) Matthias Selbach et al.   NATURE

MicroRNA (miRNA) cloning analysis reveals sex differences in miRNA expression profiles between adult mouse testis and ovary

(2008) Takuya Mishima et al.   REPRODUCTION