Evidence for a Strong Correlation Between Transcription Factor Protein Disorder and Organismic Complexity

The contribution of intrinsically disordered regions to protein function, cellular complexity, and human disease

(2016) M. Madan Babu   BIOCHEMICAL SOCIETY TRANSACTIONS

Plant Signaling: HY5 Synchronizes Resource Supply

(2016) Klaus Palme et al.   CURRENT BIOLOGY

Evolution of plant conducting cells: perspectives from key regulators of vascular cell differentiation

(2016) Misato Ohtani et al.   JOURNAL OF EXPERIMENTAL BOTANY

Emergence of proto-organisms from bistable stochastic differentiation and adhesion

(2016) Salva Duran-Nebreda et al.   Journal of the Royal Society Interface

Functional Diversification after Gene Duplication: Paralog Specific Regions of Structural Disorder and Phosphorylation in p53, p63, and p73

(2016) Helena G. dos Santos et al.   PLoS One

Polymorphism Analysis Reveals Reduced Negative Selection and Elevated Rate of Insertions and Deletions in Intrinsically Disordered Protein Regions

(2015) Tahsin Khan et al.   Genome Biology and Evolution

Plant development regulation: Overview and perspectives

(2015) Inmaculada Yruela   JOURNAL OF PLANT PHYSIOLOGY

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond

(2015) Socorro Gama-Castro et al.   NUCLEIC ACIDS RESEARCH

Intrinsically disordered proteins and multicellular organisms

(2015) A. Keith Dunker et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

DISOPRED3: precise disordered region predictions with annotated protein-binding activity

(2014) David T. Jones et al.   BIOINFORMATICS

Introducing Protein Intrinsic Disorder

(2014) Johnny Habchi et al.   CHEMICAL REVIEWS

Classification of Intrinsically Disordered Regions and Proteins

(2014) Robin van der Lee et al.   CHEMICAL REVIEWS

Ischemia in Tumors Induces Early and Sustained Phosphorylation Changes in Stress Kinase Pathways but Does Not Affect Global Protein Levels

(2014) Philipp Mertins et al.   MOLECULAR & CELLULAR PROTEOMICS

Correcting for Differential Transcript Coverage Reveals a Strong Relationship between Alternative Splicing and Organism Complexity

(2014) Lu Chen et al.   MOLECULAR BIOLOGY AND EVOLUTION

AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors

(2014) Hong-Mei Zhang et al.   NUCLEIC ACIDS RESEARCH

The Intrinsically Disordered Regions of the Drosophila melanogaster Hox Protein Ultrabithorax Select Interacting Proteins Based on Partner Topology

(2014) Hao-Ching Hsiao et al.   PLoS One

Molecular basis for AUXIN RESPONSE FACTOR protein interaction and the control of auxin response repression

(2014) D. A. Korasick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The evolutionary-developmental origins of multicellularity

(2013) K. J. Niklas   AMERICAN JOURNAL OF BOTANY

Long indels are disordered: A study of disorder and indels in homologous eukaryotic proteins

(2013) Sara Light et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Genetic recombination is associated with intrinsic disorder in plant proteomes

(2013) Inmaculada Yruela et al.   BMC GENOMICS

pico-PLAZA, a genome database of microbial photosynthetic eukaryotes

(2013) Klaas Vandepoele et al.   ENVIRONMENTAL MICROBIOLOGY

Protein Expansion Is Primarily due to Indels in Intrinsically Disordered Regions

(2013) S. Light et al.   MOLECULAR BIOLOGY AND EVOLUTION

The REIL1 and REIL2 Proteins of Arabidopsis thaliana Are Required for Leaf Growth in the Cold

(2013) S. Schmidt et al.   PLANT PHYSIOLOGY

Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages

(2013) A. de Mendoza et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ABI3 controls embryo degreening through Mendel's I locus

(2013) F. Delmas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein disorder in plants: a view from the chloroplast

(2012) Inmaculada Yruela et al.   BMC PLANT BIOLOGY

Comprehensive Comparative Assessment of In-Silico Predictors of Disordered Regions

(2012) Zhen-Ling Peng et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

Orderly order in protein intrinsic disorder distribution: disorder in 3500 proteomes from viruses and the three domains of life

(2012) Bin Xue et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Investigation of Receptor interacting protein (RIP3)-dependent Protein Phosphorylation by Quantitative Phosphoproteomics

(2012) Xiurong Wu et al.   MOLECULAR & CELLULAR PROTEOMICS

D2P2: database of disordered protein predictions

(2012) Matt E. Oates et al.   NUCLEIC ACIDS RESEARCH

Getting a grasp on domain III/IV responsible for Auxin Response Factor–IAA protein interactions

(2012) Tom J. Guilfoyle et al.   PLANT SCIENCE

Protein disorder—a breakthrough invention of evolution?

(2011) Avner Schlessinger et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Protein disorder in the centrosome correlates with complexity in cell types number

(2011) G. S. Nido et al.   Molecular BioSystems

The Arabidopsis bZIP Gene AtbZIP63 Is a Sensitive Integrator of Transient Abscisic Acid and Glucose Signals

(2011) C. C. Matiolli et al.   PLANT PHYSIOLOGY

Dynamic protein–DNA recognition: beyond what can be seen

(2011) Monika Fuxreiter et al.   TRENDS IN BIOCHEMICAL SCIENCES

The relationship between proteome size, structural disorder and organism complexity

(2011) Eva Schad et al.   GENOME BIOLOGY

Bringing order to protein disorder through comparative genomics and genetic interactions

(2011) Jeremy Bellay et al.   GENOME BIOLOGY

Cell cycle-dependent phosphorylation of human CDC5 regulates RNA processing

(2010) Remo Gräub et al.   CELL CYCLE

Evolution of Structurally Disordered Proteins Promotes Neostructuralization

(2010) J. Siltberg-Liberles   MOLECULAR BIOLOGY AND EVOLUTION

Evolutionary and comparative analysis of MYB and bHLH plant transcription factors

(2010) Antje Feller et al.   PLANT JOURNAL

Genome-Wide Classification and Evolutionary Analysis of the bHLH Family of Transcription Factors in Arabidopsis, Poplar, Rice, Moss, and Algae

(2010) L. Carretero-Paulet et al.   PLANT PHYSIOLOGY

DNA search efficiency is modulated by charge composition and distribution in the intrinsically disordered tail

(2010) D. Vuzman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A new role for plant R2R3-MYB transcription factors in cell cycle regulation

(2009) Eleonora Cominelli et al.   CELL RESEARCH

Predicting intrinsic disorder in proteins: an overview

(2009) Bo He et al.   CELL RESEARCH

Disordered Tails of Homeodomains Facilitate DNA Recognition by Providing a Trade-Off between Folding and Specific Binding

(2009) Ágnes Tóth-Petróczy et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Origin and Diversification of Basic-Helix-Loop-Helix Proteins in Plants

(2009) N. Pires et al.   MOLECULAR BIOLOGY AND EVOLUTION

Amplification of signaling via cellular allosteric relay and protein disorder

(2009) B. Ma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Green Transcription Factors: A Chlamydomonas Overview

(2008) D. M. Riano-Pachon et al.   GENETICS

Impacts of protein-protein interaction domains on organism and network complexity

(2008) K. Xia et al.   GENOME RESEARCH

Multiple Intrinsically Disordered Sequences Alter DNA Binding by the Homeodomain of theDrosophilaHox Protein Ultrabithorax

(2008) Ying Liu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Mouse development with a single E2F activator

(2008) Shih-Yin Tsai et al.   NATURE

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

(2008) A. Dereeper et al.   NUCLEIC ACIDS RESEARCH

The microRNA regulated SBP-box genes SPL9 and SPL15 control shoot maturation in Arabidopsis

(2008) Stefan Schwarz et al.   PLANT MOLECULAR BIOLOGY

The Role of bZIP Transcription Factors in Green Plant Evolution: Adaptive Features Emerging from Four Founder Genes

(2008) Luiz Gustavo Guedes Corrêa et al.   PLoS One