Horizontal Acquisition and Transcriptional Integration of Novel Genes in Mosquito-Associated Spiroplasma

Bacterial antisense RNAs are mainly the product of transcriptional noise

(2016) V. Llorens-Rico et al.   Science Advances

Found and Lost: The Fates of Horizontally Acquired Genes in Arthropod-SymbioticSpiroplasma

(2015) Wen-Sui Lo et al.   Genome Biology and Evolution

Genome Sequence of the Drosophila melanogaster Male-Killing Spiroplasma Strain MSRO Endosymbiont

(2015) Juan C. Paredes et al.   mBio

Temporal Coordination of Carbohydrate Metabolism during Mosquito Reproduction

(2015) Yuan Hou et al.   PLoS Genetics

The Tiniest Tiny Genomes

(2014) Nancy A. Moran et al.   Annual Review of Microbiology

Molecular Evolution of the Substrate Utilization Strategies and Putative Virulence Factors in Mosquito-Associated Spiroplasma Species

(2014) Tean-Hsu Chang et al.   Genome Biology and Evolution

Comparative genome analysis of Spiroplasma melliferum IPMB4A, a honeybee-associated bacterium

(2013) Wen-Sui Lo et al.   BMC GENOMICS

Comparison of Metabolic Capacities and Inference of Gene Content Evolution in Mosquito-Associated Spiroplasma diminutum and S. taiwanense

(2013) Wen-Sui Lo et al.   Genome Biology and Evolution

Complete Genomes of Two Dipteran-Associated Spiroplasmas Provided Insights into the Origin, Dynamics, and Impacts of Viral Invasion in Spiroplasma

(2013) Chuan Ku et al.   Genome Biology and Evolution

Animals in a bacterial world, a new imperative for the life sciences

(2013) Margaret McFall-Ngai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Exploring the costs of horizontal gene transfer

(2013) David A. Baltrus   TRENDS IN ECOLOGY & EVOLUTION

High Expression Hampers Horizontal Gene Transfer

(2012) Chungoo Park et al.   Genome Biology and Evolution

Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis

(2012) P. Nicolas et al.   SCIENCE

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

(2011) T. Carver et al.   BIOINFORMATICS

Trends and barriers to lateral gene transfer in prokaryotes

(2011) Ovidiu Popa et al.   CURRENT OPINION IN MICROBIOLOGY

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

Spiroplasma as a model insect endosymbiont

(2011) Hisashi Anbutsu et al.   Environmental Microbiology Reports

Partial Chromosome Sequence of Spiroplasma citri Reveals Extensive Viral Invasion and Important Gene Decay

(2010) P. Carle et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Bcheck: a wrapper tool for detecting RNase P RNA genes

(2010) Dilmurat Yusuf et al.   BMC GENOMICS

The Complexity Hypothesis Revisited: Connectivity Rather Than Function Constitutes a Barrier to Horizontal Gene Transfer

(2010) O. Cohen et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Extinction Dynamics of Bacterial Pseudogenes

(2010) Chih-Horng Kuo et al.   PLoS Genetics

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Carbon Catabolite Control of the Metabolic Network inBacillus subtilis

(2009) Yasutaro FUJITA   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

The consequences of genetic drift for bacterial genome complexity

(2009) C.-H. Kuo et al.   GENOME RESEARCH

Genomics and Evolution of Heritable Bacterial Symbionts

(2008) Nancy A. Moran et al.   Annual Review of Genetics

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Trends in Prokaryotic Evolution Revealed by Comparison of Closely Related Bacterial and Archaeal Genomes

(2008) P. S. Novichkov et al.   JOURNAL OF BACTERIOLOGY

Glycerol Metabolism Is Important for Cytotoxicity ofMycoplasma pneumoniae

(2008) Claudine Hames et al.   JOURNAL OF BACTERIOLOGY

Learning how to live together: genomic insights into prokaryote–animal symbioses

(2008) Andrés Moya et al.   NATURE REVIEWS GENETICS

Carbon catabolite repression in bacteria: many ways to make the most out of nutrients

(2008) Boris Görke et al.   NATURE REVIEWS MICROBIOLOGY