Cis-Regulatory Divergence in Gene Expression between Two Thermally Divergent Yeast Species

Buffering of Genetic Regulatory Networks in Drosophila melanogaster

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Polygenic evolution of a sugar specialization trade-off in yeast

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Unraveling determinants of transcription factor binding outside the core binding site

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HTSeq--a Python framework to work with high-throughput sequencing data

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Molecular dissection of the genetic mechanisms that underlie expression conservation in orthologous yeast ribosomal promoters

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A New System for Comparative Functional Genomics of Saccharomyces Yeasts

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The Mitochondrial Genome Impacts Respiration but Not Fermentation in Interspecific Saccharomyces Hybrids

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The genomic determinants of genotype × environment interactions in gene expression

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Polygenic cis-regulatory adaptation in the evolution of yeast pathogenicity

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A systematic study of gene expression variation at single-nucleotide resolution reveals widespread regulatory roles for uAUGs

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Biology of the Heat Shock Response and Protein Chaperones: Budding Yeast (Saccharomyces cerevisiae) as a Model System

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Evolution of a Membrane Protein Regulon in Saccharomyces

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Comparative studies of gene expression and the evolution of gene regulation

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Contrasting Properties of Gene-Specific Regulatory, Coding, and Copy Number Mutations in Saccharomyces cerevisiae: Frequency, Effects, and Dominance

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Regulatory Variation Within and Between Species

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Temperature Adaptation Markedly Determines Evolution within the GenusSaccharomyces

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Genome-wide approaches to the study of adaptive gene expression evolution

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Evidence of association between Nucleosome Occupancy and the Evolution of Transcription Factor Binding Sites in Yeast

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YeTFaSCo: a database of evaluated yeast transcription factor sequence specificities

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Evidence for Divergent Evolution of Growth Temperature Preference in Sympatric Saccharomyces Species

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The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus

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Global Analysis of the Impact of Environmental Perturbation on cis-Regulation of Gene Expression

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Systematic Detection of Polygenic cis-Regulatory Evolution

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Predicting nucleosome positioning using a duration Hidden Markov Model

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Evidence for widespread adaptive evolution of gene expression in budding yeast

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Polygenic and directional regulatory evolution across pathways in Saccharomyces

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Differential expression analysis for sequence count data

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A Yeast Hybrid Provides Insight into the Evolution of Gene Expression Regulation

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Evolving gene expression: from G to E to G×E

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Fast Statistical Alignment

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THE LOCI OF EVOLUTION: HOW PREDICTABLE IS GENETIC EVOLUTION?

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The environmental contribution to gene expression profiles

(2008) Greg Gibson   NATURE REVIEWS GENETICS

Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation

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Evolution of gene sequence and gene expression are not correlated in yeast

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Gene–Environment Interaction in Yeast Gene Expression

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