Evolution of miRNA Tailing by 3′ Terminal Uridylyl Transferases in Metazoa

The evolutionary origin of plant and animal microRNAs

(2017) Yehu Moran et al.   Nature Ecology & Evolution

Genome-wide analysis of single non-templated nucleotides in plant endogenous siRNAs and miRNAs

(2016) Feng Wang et al.   NUCLEIC ACIDS RESEARCH

TUT7 controls the fate of precursor microRNAs by using three different uridylation mechanisms

(2015) B. Kim et al.   EMBO JOURNAL

Selective Suppression of the Splicing-Mediated MicroRNA Pathway by the Terminal Uridyltransferase Tailor

(2015) Diane Bortolamiol-Becet et al.   MOLECULAR CELL

Uridylation of RNA Hairpins by Tailor Confines the Emergence of MicroRNAs in Drosophila

(2015) Madalena M. Reimão-Pinto et al.   MOLECULAR CELL

Destabilization of microRNAs in human cells by 3′ deadenylation mediated by PARN and CUGBP1

(2015) Takayuki Katoh et al.   NUCLEIC ACIDS RESEARCH

A customized Web portal for the genome of the ctenophore Mnemiopsis leidyi

(2014) R Moreland et al.   BMC GENOMICS

Uridylation by TUT4 and TUT7 Marks mRNA for Degradation

(2014) Jaechul Lim et al.   CELL

Cnidarian microRNAs frequently regulate targets by cleavage

(2014) Y. Moran et al.   GENOME RESEARCH

Dynamic RNA Modifications in Posttranscriptional Regulation

(2014) Xiao Wang et al.   MOLECULAR CELL

Adenylation of Maternally Inherited MicroRNAs by Wispy

(2014) Mihye Lee et al.   MOLECULAR CELL

Selective microRNA uridylation by Zcchc6 (TUT7) and Zcchc11 (TUT4)

(2014) James E. Thornton et al.   NUCLEIC ACIDS RESEARCH

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Analysis of Hydra PIWI proteins and piRNAs uncover early evolutionary origins of the piRNA pathway

(2013) Robyn S.M. Lim et al.   DEVELOPMENTAL BIOLOGY

The Evolution of MicroRNA Pathway Protein Components in Cnidaria

(2013) Yehu Moran et al.   MOLECULAR BIOLOGY AND EVOLUTION

Cytoplasmic RNA: a case of the tail wagging the dog

(2013) Chris J. Norbury   NATURE REVIEWS MOLECULAR CELL BIOLOGY

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Plant MicroRNAs Display Differential 3' Truncation and Tailing Modifications That Are ARGONAUTE1 Dependent and Conserved Across Species

(2013) J. Zhai et al.   PLANT CELL

The Human TUT1 Nucleotidyl Transferase as a Global Regulator of microRNA Abundance

(2013) Emily C. Knouf et al.   PLoS One

Mono-Uridylation of Pre-MicroRNA as a Key Step in the Biogenesis of Group II let-7 MicroRNAs

(2012) Inha Heo et al.   CELL

Regulation of small RNA stability: methylation and beyond

(2012) Lijuan Ji et al.   CELL RESEARCH

Structural basis for the activity of a cytoplasmic RNA terminal uridylyl transferase

(2012) Luke A Yates et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Crystal structures of the Cid1 poly (U) polymerase reveal the mechanism for UTP selectivity

(2012) Bradley M. Lunde et al.   NUCLEIC ACIDS RESEARCH

Specific miRNA Stabilization by Gld2-Catalyzed Monoadenylation

(2012) Andrea D’Ambrogio et al.   Cell Reports

Mitochondrial poly(A) polymerase and polyadenylation

(2011) Jeong Ho Chang et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

The 3′-to-5′ Exoribonuclease Nibbler Shapes the 3′ Ends of MicroRNAs Bound to Drosophila Argonaute1

(2011) Bo W. Han et al.   CURRENT BIOLOGY

Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity

(2011) S. K. Wyman et al.   GENOME RESEARCH

The Genome Portal of the Department of Energy Joint Genome Institute

(2011) I. V. Grigoriev et al.   NUCLEIC ACIDS RESEARCH

A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness

(2010) A. M. Burroughs et al.   GENOME RESEARCH

The human cytoplasmic RNA terminal U-transferase ZCCHC11 targets histone mRNAs for degradation

(2010) M.-J. Schmidt et al.   RNA

Target RNA-Directed Trimming and Tailing of Small Silencing RNAs

(2010) S. L. Ameres et al.   SCIENCE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Evidence for human microRNA-offset RNAs in small RNA sequencing data

(2009) D. Langenberger et al.   BIOINFORMATICS

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

The deep evolution of metazoan microRNAs

(2009) Benjamin M. Wheeler et al.   EVOLUTION & DEVELOPMENT

Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2

(2009) T. Katoh et al.   GENES & DEVELOPMENT

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Decapping is preceded by 3′ uridylation in a novel pathway of bulk mRNA turnover

(2009) Olivia S Rissland et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Compagen, a comparative genomics platform for early branching metazoan animals, reveals early origins of genes regulating stem-cell differentiation

(2008) Georg Hemmrich et al.   BIOESSAYS

Degradation of histone mRNA requires oligouridylation followed by decapping and simultaneous degradation of the mRNA both 5' to 3' and 3' to 5'

(2008) T. E. Mullen et al.   GENES & DEVELOPMENT

Wispy, the Drosophila Homolog of GLD-2, Is Required During Oogenesis and Egg Activation

(2008) J. Cui et al.   GENETICS

Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals

(2008) Andrew Grimson et al.   NATURE