“Prokaryotic Pathway” Is Not Prokaryotic: Noncyanobacterial Origin of the Chloroplast Lipid Biosynthetic Pathway Revealed by Comprehensive Phylogenomic Analysis

Diverse origins of enzymes involved in the biosynthesis of chloroplast peptidoglycan

(2017) Naoki Sato et al.   JOURNAL OF PLANT RESEARCH

Diversity of the Photosynthetic Paulinella Species, with the Description of Paulinella micropora sp. nov. and the Chromatophore Genome Sequence for strain KR01

(2017) Duckhyun Lhee et al.   PROTIST

Biotic Host–Pathogen Interactions As Major Drivers of Plastid Endosymbiosis

(2017) Ugo Cenci et al.   TRENDS IN PLANT SCIENCE

Lipid metabolism and potentials of biofuel and high added-value oil production in red algae

(2017) Naoki Sato et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Phylogenetic rooting using minimal ancestor deviation

(2017) Fernando Domingues Kümmel Tria et al.   Nature Ecology & Evolution

Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants

(2016) Marijke J. van Baren et al.   BMC GENOMICS

Molecular evolution of the lysophosphatidic acid acyltransferase (LPAAT) gene family

(2016) Ana Paula Körbes et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Endosymbiosis and Eukaryotic Cell Evolution

(2015) John M. Archibald   CURRENT BIOLOGY

GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters

(2015) Itamar Sela et al.   NUCLEIC ACIDS RESEARCH

Is Monoglucosyldiacylglycerol a Precursor to Monogalactosyldiacylglycerol in All Cyanobacteria?

(2015) Naoki Sato   PLANT AND CELL PHYSIOLOGY

Metabolism of acyl-lipids inChlamydomonas reinhardtii

(2015) Yonghua Li-Beisson et al.   PLANT JOURNAL

Endosymbiotic gene transfer from prokaryotic pangenomes: Inherited chimerism in eukaryotes

(2015) Chuan Ku et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plastid establishment did not require a chlamydial partner

(2015) Daryl Domman et al.   Nature Communications

Molecular Phylogeny and Intricate Evolutionary History of the Three Isofunctional Enzymes Involved in the Oxidation of Protoporphyrinogen IX

(2014) Koichi Kobayashi et al.   Genome Biology and Evolution

Oxygenic photosynthesis without galactolipids

(2014) Koichiro Awai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of galactoglycerolipid biosynthetic pathways – From cyanobacteria to primary plastids and from primary to secondary plastids

(2014) Dimitris Petroutsos et al.   PROGRESS IN LIPID RESEARCH

Assessing the bacterial contribution to the plastid proteome

(2013) Huan Qiu et al.   TRENDS IN PLANT SCIENCE

Genomes of Stigonematalean Cyanobacteria (Subsection V) and the Evolution of Oxygenic Photosynthesis from Prokaryotes to Plastids

(2012) Tal Dagan et al.   Genome Biology and Evolution

Cyanophora paradoxa Genome Elucidates Origin of Photosynthesis in Algae and Plants

(2012) D. C. Price et al.   SCIENCE

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

TAG, You’re it! Chlamydomonas as a reference organism for understanding algal triacylglycerol accumulation

(2011) Sabeeha S Merchant et al.   CURRENT OPINION IN BIOTECHNOLOGY

The evolution of glycogen and starch metabolism in eukaryotes gives molecular clues to understand the establishment of plastid endosymbiosis

(2011) Steven Ball et al.   JOURNAL OF EXPERIMENTAL BOTANY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Gclust: trans-kingdom classification of proteins using automatic individual threshold setting

(2009) Naoki Sato   BIOINFORMATICS

Phylogenomic and structural modeling analyses of the PsbP superfamily reveal multiple small segment additions in the evolution of photosystem II-associated PsbP protein in green plants

(2009) Naoki Sato   MOLECULAR PHYLOGENETICS AND EVOLUTION

Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas

(2009) A. Z. Worden et al.   SCIENCE

Chromatophore Genome Sequence of Paulinella Sheds Light on Acquisition of Photosynthesis by Eukaryotes

(2008) Eva C.M. Nowack et al.   CURRENT BIOLOGY