Genome-wide identification, functional prediction, and evolutionary analysis of the R2R3-MYB superfamily in Brassica napus

Genomes and Transcriptomes of Partners in Plant-Fungal- Interactions between Canola (Brassica napus) and Two Leptosphaeria Species

(2017) Rohan G. T. Lowe et al.   PLoS One

Genome-wide characterization and expression analysis of MYB transcription factors in Gossypium hirsutum

(2016) Haron Salih et al.   BMC GENETICS

Identification, cloning and characterization of R2R3-MYB gene family in canola (Brassica napusL.) identify a novel member modulating ROS accumulation and hypersensitive-like cell death

(2016) Bisi Chen et al.   DNA RESEARCH

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

(2016) Enis Afgan et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Analysis of the R2R3 MYB Subfamily Genes in Lotus (Nelumbo nucifera)

(2016) Jiao Deng et al.   PLANT MOLECULAR BIOLOGY REPORTER

Genome-wide bioinformatics analysis of Dof transcription factor gene family of chickpea and its comparative phylogenetic assessment with Arabidopsis and rice

(2016) Jeya Nasim et al.   PLANT SYSTEMATICS AND EVOLUTION

Genome-wide identification of cassava R2R3 MYB family genes related to abscission zone separation after environmental-stress-induced abscission

(2016) Wenbin Liao et al.   Scientific Reports

Origination, Expansion, Evolutionary Trajectory, and Expression Bias of AP2/ERF Superfamily in Brassica napus

(2016) Xiaoming Song et al.   Frontiers in Plant Science

Genome-Wide Identification of R2R3-MYB Genes and Expression Analyses During Abiotic Stress in Gossypium raimondii

(2016) Qiuling He et al.   Scientific Reports

Genome-wide analysis of the R2R3-MYB transcription factor genes in Chinese cabbage (Brassica rapa ssp. pekinensis) reveals their stress and hormone responsive patterns

(2015) Zhen Wang et al.   BMC GENOMICS

MYB transcription factors, active players in abiotic stress signaling

(2015) Chaonan Li et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

SynFind: Compiling Syntenic Regions across Any Set of Genomes on Demand

(2015) Haibao Tang et al.   Genome Biology and Evolution

MYB Transcription Factors as Regulators of Phenylpropanoid Metabolism in Plants

(2015) Jingying Liu et al.   Molecular Plant

TheBrassica napusreceptor-like protein RLM2 is encoded by a second allele of theLepR3/Rlm2blackleg resistance locus

(2015) Nicholas J. Larkan et al.   PLANT BIOTECHNOLOGY JOURNAL

Transcriptome Analysis of Canola (Brassica napus) under Salt Stress at the Germination Stage

(2015) Weihua Long et al.   PLoS One

Identification of environmentally stable QTL for resistance against Leptosphaeria maculans in oilseed rape (Brassica napus)

(2015) Y. J. Huang et al.   THEORETICAL AND APPLIED GENETICS

GSDS 2.0: an upgraded gene feature visualization server

(2014) Bo Hu et al.   BIOINFORMATICS

Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet (Beta vulgaris)

(2014) Ralf Stracke et al.   BMC PLANT BIOLOGY

Genome-wide analysis of the R2R3-MYB transcription factor gene family in sweet orange (Citrus sinensis)

(2014) Chaoyang Liu et al.   MOLECULAR BIOLOGY REPORTS

GPS-SUMO: a tool for the prediction of sumoylation sites and SUMO-interaction motifs

(2014) Qi Zhao et al.   NUCLEIC ACIDS RESEARCH

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Genomic and transcriptomic characterization of the transcription factor family R2R3-MYB in soybean and its involvement in the resistance responses to Phakopsora pachyrhizi

(2014) Luciano N. Aoyagi et al.   PLANT SCIENCE

Genome-Wide Analysis of Citrus R2R3MYB Genes and Their Spatiotemporal Expression under Stresses and Hormone Treatments

(2014) Rangjin Xie et al.   PLoS One

Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

(2014) B. Chalhoub et al.   SCIENCE

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transcriptome-wide identification of R2R3-MYB transcription factors in barley with their boron responsive expression analysis

(2013) Huseyin Tombuloglu et al.   MOLECULAR GENETICS AND GENOMICS

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Identification and validation of promoters and cis-acting regulatory elements

(2013) Carlos M. Hernandez-Garcia et al.   PLANT SCIENCE

PSI: A Comprehensive and Integrative Approach for Accurate Plant Subcellular Localization Prediction

(2013) Lili Liu et al.   PLoS One

MYB transcription factor genes as regulators for plant responses: an overview

(2013) Supriya Ambawat et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis

(2012) Amit Katiyar et al.   BMC GENOMICS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution

(2012) Rebecca M. Davidson et al.   PLANT JOURNAL

The R2R3-MYB Transcription Factor Gene Family in Maize

(2012) Hai Du et al.   PLoS One

Brassica napus PHR1 Gene Encoding a MYB-Like Protein Functions in Response to Phosphate Starvation

(2012) Feng Ren et al.   PLoS One

Genome-Wide Identification and Characterization of R2R3MYB Family in Cucumis sativus

(2012) Qiang Li et al.   PLoS One

Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants

(2011) Basel Khraiwesh et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

BRAD, the genetics and genomics database for Brassica plants

(2011) Feng Cheng et al.   BMC PLANT BIOLOGY

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Modes of Gene Duplication Contribute Differently to Genetic Novelty and Redundancy, but Show Parallels across Divergent Angiosperms

(2011) Yupeng Wang et al.   PLoS One

Musite, a Tool for Global Prediction of General and Kinase-specific Phosphorylation Sites

(2010) Jianjiong Gao et al.   MOLECULAR & CELLULAR PROTEOMICS

Evolutionary and comparative analysis of MYB and bHLH plant transcription factors

(2010) Antje Feller et al.   PLANT JOURNAL

MYB transcription factors in Arabidopsis

(2010) Christian Dubos et al.   TRENDS IN PLANT SCIENCE

Biochemical and molecular characterization of plant MYB transcription factor family

(2009) Hai Du et al.   BIOCHEMISTRY-MOSCOW

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Protein structure prediction on the Web: a case study using the Phyre server

(2009) Lawrence A Kelley et al.   Nature Protocols

A Novel Group of Transcriptional Repressors in Arabidopsis

(2009) Miho Ikeda et al.   PLANT AND CELL PHYSIOLOGY

The Grapevine R2R3-MYB Transcription Factor VvMYBF1 Regulates Flavonol Synthesis in Developing Grape Berries

(2009) S. Czemmel et al.   PLANT PHYSIOLOGY

Identification, analysis, and prediction of protein ubiquitination sites

(2009) Predrag Radivojac et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Functional Characterization of the N-terminal Domain of Subunit H (Vma13p) of the Yeast Vacuolar ATPase

(2008) Andrew R. Flannery et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

How to usefully compare homologous plant genes and chromosomes as DNA sequences

(2008) Eric Lyons et al.   PLANT JOURNAL

Regulating the Regulators: The Future Prospects for Transcription-Factor-Based Agricultural Biotechnology Products

(2008) K. Century et al.   PLANT PHYSIOLOGY

Synteny and Collinearity in Plant Genomes

(2008) H. Tang et al.   SCIENCE