Using metagenomics to show the efficacy of forest restoration in the New Jersey Pine Barrens

A comparison of the wet and dry season DNA-based soil invertebrate community characteristics in large patches of the bromeliad Bromelia pinguin in a primary forest in Costa Rica

(2015) Katie M. McGee et al.   APPLIED SOIL ECOLOGY

Don't let spurious accusations of pseudoreplication limit our ability to learn from natural experiments (and other messy kinds of ecological monitoring)

(2015) G. Matt Davies et al.   Ecology and Evolution

Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics

(2014) J. Gibson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Mapping the niche space of soil microorganisms using taxonomy and traits

(2012) Jay T. Lennon et al.   ECOLOGY

Ecosystem processes and interactions in a morass of diversity

(2012) James I. Prosser   FEMS MICROBIOLOGY ECOLOGY

Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing

(2012) DONALD J. BAIRD et al.   MOLECULAR ECOLOGY

Next-generation sequencing technologies for environmental DNA research

(2012) SHADI SHOKRALLA et al.   MOLECULAR ECOLOGY

The golden age of DNA metasystematics

(2012) Mehrdad Hajibabaei   TRENDS IN GENETICS

Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol

(2012) Mehrdad Hajibabaei et al.   BMC ECOLOGY

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos

(2011) Mehrdad Hajibabaei et al.   PLoS One

Flooding Greatly Affects the Diversity of Arbuscular Mycorrhizal Fungi Communities in the Roots of Wetland Plants

(2011) Yutao Wang et al.   PLoS One

Modeling Diverse Communities of Marine Microbes

(2010) Michael J. Follows et al.   Annual Review of Marine Science

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

The ecological coherence of high bacterial taxonomic ranks

(2010) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How understanding aboveground–belowground linkages can assist restoration ecology

(2010) Paul Kardol et al.   TRENDS IN ECOLOGY & EVOLUTION

Arbuscular mycorrhizal fungi in two mangroves in South China

(2009) Yutao Wang et al.   PLANT AND SOIL

Effects of soil microarthropods on plant litter decomposition across an elevation gradient in the Wuyi Mountains

(2009) Shaojun Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Phenol oxidase, peroxidase and organic matter dynamics of soil

(2009) Robert L. Sinsabaugh   SOIL BIOLOGY & BIOCHEMISTRY

Thermal adaptation of soil microbial respiration to elevated temperature

(2008) Mark A. Bradford et al.   ECOLOGY LETTERS

Decomposers in disguise: mycorrhizal fungi as regulators of soil C dynamics in ecosystems under global change

(2008) J. M. Talbot et al.   FUNCTIONAL ECOLOGY