PhredEM: a phred-score-informed genotype-calling approach for next-generation sequencing studies
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Title
PhredEM: a phred-score-informed genotype-calling approach for next-generation sequencing studies
Authors
Keywords
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Journal
GENETIC EPIDEMIOLOGY
Volume 41, Issue 5, Pages 375-387
Publisher
Wiley
Online
2017-05-31
DOI
10.1002/gepi.22048
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Note: Only part of the references are listed.- Testing Rare-Variant Association without Calling Genotypes Allows for Systematic Differences in Sequencing between Cases and Controls
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- (2015) Richard A. Gibbs et al. NATURE
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- (2012) Michael Quail et al. BMC GENOMICS
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- (2012) R. Do et al. HUMAN MOLECULAR GENETICS
- Comparison of Next-Generation Sequencing Systems
- (2012) Lin Liu et al. JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
- Genotype and SNP calling from next-generation sequencing data
- (2011) Rasmus Nielsen et al. NATURE REVIEWS GENETICS
- Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems
- (2011) André E Minoche et al. GENOME BIOLOGY
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- (2009) Brian L. Browning et al. AMERICAN JOURNAL OF HUMAN GENETICS
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- Human Triallelic Sites: Evidence for a New Mutational Mechanism?
- (2009) A. Hodgkinson et al. GENETICS
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