Longissimus lumborum muscle transcriptome analysis of Laiwu and Yorkshire pigs differing in intramuscular fat content

Exploring transcriptomic diversity in muscle revealed that cellular signaling pathways mainly differentiate five Western porcine breeds

(2015) Magali SanCristobal et al.   BMC GENOMICS

Dynamic transcriptome profiles of skeletal muscle tissue across 11 developmental stages for both Tongcheng and Yorkshire pigs

(2015) Yuqiang Zhao et al.   BMC GENOMICS

Whole transcriptome analysis of the porcine muscle tissue of breeds differing in muscularity and meat quality traits

(2015) K. Ropka-Molik et al.   Livestock Science

Longissimus dorsi transcriptome analysis of purebred and crossbred Iberian pigs differing in muscle characteristics

(2014) Cristina Óvilo et al.   BMC GENOMICS

Transcriptome analysis of porcine M. semimembranosus divergent in intramuscular fat as a consequence of dietary protein restriction

(2013) Ruth M Hamill et al.   BMC GENOMICS

Underlying functional genomics of fat deposition in adipose tissue

(2013) Mohammad Reza Bakhtiarizadeh et al.   GENE

A gene expression atlas of the domestic pig

(2012) Tom C Freeman et al.   BMC BIOLOGY

Completion of the swine genome will simplify the production of swine as a large animal biomedical model

(2012) Eric M Walters et al.   BMC Medical Genomics

Developmental changes and effect on intramuscular fat content of H-FABP and A-FABP mRNA expression in pigs

(2012) Qi-Mei Chen et al.   JOURNAL OF APPLIED GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Comparison of Muscle Transcriptome between Pigs with Divergent Meat Quality Phenotypes Identifies Genes Related to Muscle Metabolism and Structure

(2012) Marie Damon et al.   PLoS One

An atlas of DNA methylomes in porcine adipose and muscle tissues

(2012) Mingzhou Li et al.   Nature Communications

Transcriptome profiling of sheep granulosa cells and oocytes during early follicular development obtained by Laser Capture Microdissection

(2011) Agnes Bonnet et al.   BMC GENOMICS

A global view of porcine transcriptome in three tissues from a full-sib pair with extreme phenotypes in growth and fat deposition by paired-end RNA sequencing

(2011) Congying Chen et al.   BMC GENOMICS

Analysis of Muscle and Ovary Transcriptome of Sus scrofa: Assembly, Annotation and Marker Discovery

(2011) Q. Nie et al.   DNA RESEARCH

Next-generation transcriptome assembly

(2011) Jeffrey A. Martin et al.   NATURE REVIEWS GENETICS

Effects of phospholipid hydroperoxide glutathione peroxidase mRNA expression on meat quality of M. longissimus dorsi in pigs

(2010) Wei Chen et al.   EUROPEAN FOOD RESEARCH AND TECHNOLOGY

Chromosomal localization of 13 candidate genes for human obesity in the pig genome

(2010) Joanna Nowacka-Woszuk et al.   JOURNAL OF APPLIED GENETICS

Comparative studies of skeletal muscle proteome and transcriptome profilings between pig breeds

(2010) Nam-Kuk Kim et al.   MAMMALIAN GENOME

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

RNA sequencing: advances, challenges and opportunities

(2010) Fatih Ozsolak et al.   NATURE REVIEWS GENETICS

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Characterization of the porcine differentially expressed PDK4 gene and association with meat quality

(2008) Jing Lan et al.   MOLECULAR BIOLOGY REPORTS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS