Signatures of selection in embryonic transcriptomes of lizards adapting in parallel to cool climate

Dimension reduction techniques for the integrative analysis of multi-omics data

(2016) Chen Meng et al.   BRIEFINGS IN BIOINFORMATICS

Hemoglobin–oxygen affinity in high-altitude vertebrates: is there evidence for an adaptive trend?

(2016) Jay F. Storz   JOURNAL OF EXPERIMENTAL BIOLOGY

Loss of genetic diversity and increased embryonic mortality in non-native lizard populations

(2016) Sozos N. Michaelides et al.   MOLECULAR ECOLOGY

Predictable convergence in hemoglobin function has unpredictable molecular underpinnings

(2016) Chandrasekhar Natarajan et al.   SCIENCE

Sexual selection drives asymmetric introgression in wall lizards

(2015) Geoffrey M. While et al.   ECOLOGY LETTERS

Widespread primary, but geographically restricted secondary, human introductions of wall lizards,Podarcis muralis

(2015) Sozos N. Michaelides et al.   MOLECULAR ECOLOGY

Phenotypic plasticity in gene expression contributes to divergence of locally adapted populations ofFundulus heteroclitus

(2015) David I. Dayan et al.   MOLECULAR ECOLOGY

Non-adaptive plasticity potentiates rapid adaptive evolution of gene expression in nature

(2015) Cameron K. Ghalambor et al.   NATURE

Widespread convergence in toxin resistance by predictable molecular evolution

(2015) Beata Ujvari et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Adaptive responses to cool climate promotes persistence of a non-native lizard

(2015) G. M. While et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Parallel Gene Expression Differences between Low and High Latitude Populations of Drosophila melanogaster and D. simulans

(2015) Li Zhao et al.   PLoS Genetics

Evaluating intra- and inter-individual variation in the human placental transcriptome

(2015) David A Hughes et al.   GENOME BIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

From southern refugia to the northern range margin: genetic population structure of the common wall lizard,Podarcis muralis

(2013) Franz Gassert et al.   JOURNAL OF BIOGEOGRAPHY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

QST–FST comparisons: evolutionary and ecological insights from genomic heterogeneity

(2013) Tuomas Leinonen et al.   NATURE REVIEWS GENETICS

Human introductions create opportunities for intra-specific hybridization in an alien lizard

(2012) Sozos Michaelides et al.   BIOLOGICAL INVASIONS

Altitudinal variation in egg retention and rates of embryonic development in oviparous Zootoca vivipara fits predictions from the cold-climate model on the evolution of viviparity

(2012) T. Rodríguez-Díaz et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

(2011) Marcus Lechner et al.   BMC BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Uniform Selection as a Primary Force Reducing Population Genetic Differentiation of Cavitation Resistance across a Species Range

(2011) Jean-Baptiste Lamy et al.   PLoS One

Convergent evolution in biosynthesis of cyanogenic defence compounds in plants and insects

(2011) Niels Bjerg Jensen et al.   Nature Communications

The Physiological Basis of Geographic Variation in Rates of Embryonic Development within a Widespread Lizard Species

(2010) Wei‐Guo Du et al.   AMERICAN NATURALIST

GENE FLOW AND SELECTION ON PHENOTYPIC PLASTICITY IN AN ISLAND SYSTEM OF RANA TEMPORARIA

(2010) Martin I. Lind et al.   EVOLUTION

Statistical Design and Analysis of RNA Sequencing Data

(2010) P. L. Auer et al.   GENETICS

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

The Covariance between Genetic and Environmental Influences across Ecological Gradients

(2009) David O. Conover et al.   Annals of the New York Academy of Sciences

Testing for Spatially Divergent Selection: Comparing QST to FST

(2009) M. C. Whitlock et al.   GENETICS

Adaptation to an extraordinary environment by evolution of phenotypic plasticity and genetic assimilation

(2009) R. LANDE   JOURNAL OF EVOLUTIONARY BIOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Evolutionary inference fromQST

(2008) MICHAEL C. WHITLOCK   MOLECULAR ECOLOGY