Evaluating intra- and inter-individual variation in the human placental transcriptome

RNA-seq: impact of RNA degradation on transcript quantification

(2014) Irene Gallego Romero et al.   BMC BIOLOGY

Human genomic regions with exceptionally high levels of population differentiation identified from 911 whole-genome sequences

(2014) Vincenza Colonna et al.   GENOME BIOLOGY

A flexible count data model to fit the wide diversity of expression profiles arising from extensively replicated RNA-seq experiments

(2013) Mikel Esnaola et al.   BMC BIOINFORMATICS

Identifying Recent Adaptations in Large-Scale Genomic Data

(2013) Sharon R. Grossman et al.   CELL

Genetic and Nongenetic Variation Revealed for the Principal Components of Human Gene Expression

(2013) Anita Goldinger et al.   GENETICS

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

(2013) Alex K. Shalek et al.   NATURE

Transcriptome and genome sequencing uncovers functional variation in humans

(2013) Tuuli Lappalainen et al.   NATURE

QST–FST comparisons: evolutionary and ecological insights from genomic heterogeneity

(2013) Tuomas Leinonen et al.   NATURE REVIEWS GENETICS

Fetal Growth and Childhood Cancer: A Population-Based Study

(2013) T. Bjorge et al.   PEDIATRICS

Parental smoking and risk of childhood brain tumors

(2012) Elizabeth Milne et al.   INTERNATIONAL JOURNAL OF CANCER

Patterns of Cis Regulatory Variation in Diverse Human Populations

(2012) Barbara E. Stranger et al.   PLoS Genetics

Spatio-temporal transcriptome of the human brain

(2011) Hyo Jung Kang et al.   NATURE

Malaria in pregnancy: small babies, big problem

(2011) Alexandra J. Umbers et al.   TRENDS IN PARASITOLOGY

Toward a more uniform sampling of human genetic diversity: A survey of worldwide populations by high-density genotyping

(2010) Jinchuan Xing et al.   GENOMICS

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Geographical genomics of human leukocyte gene expression variation in southern Morocco

(2009) Youssef Idaghdour et al.   NATURE GENETICS

Genetic Variation and Recent Positive Selection in Worldwide Human Populations: Evidence from Nearly 1 Million SNPs

(2009) David López Herráez et al.   PLoS One

Improved base calling for the Illumina Genome Analyzer using machine learning strategies

(2009) Martin Kircher et al.   GENOME BIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Evaluation of Genetic Variation Contributing to Differences in Gene Expression between Populations

(2008) Wei Zhang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Sources of variation in baseline gene expression levels from toxicogenomics study control animals across multiple laboratories

(2008) Michael J Boedigheimer et al.   BMC GENOMICS

Evolutionary inference fromQST

(2008) MICHAEL C. WHITLOCK   MOLECULAR ECOLOGY

Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation

(2008) J. Z. Li et al.   SCIENCE

Effects of cis and trans Genetic Ancestry on Gene Expression in African Americans

(2008) Alkes L. Price et al.   PLoS Genetics