Metagenomic insights into effects of spent engine oil perturbation on the microbial community composition and function in a tropical agricultural soil

Bioaugmentation and biostimulation of hydrocarbon degradation and the microbial community in a petroleum-contaminated soil

(2016) Manli Wu et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

From Rare to Dominant: a Fine-Tuned Soil Bacterial Bloom during Petroleum Hydrocarbon Bioremediation

(2015) Sebastián Fuentes et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effect of biostimulation, temperature and salinity on respiration activities and bacterial community composition in an oil polluted desert soil

(2015) Raeid M.M. Abed et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Carbazole angular dioxygenation and mineralization by bacteria isolated from hydrocarbon-contaminated tropical African soil

(2014) L. B. Salam et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Description of gamma radiation-resistant Geodermatophilus dictyosporus sp. nov. to accommodate the not validly named Geodermatophilus obscurus subsp. dictyosporus (Luedemann, 1968)

(2014) Maria del Carmen Montero-Calasanz et al.   EXTREMOPHILES

Diversity of Bacterial Communities Along a Petroleum Contamination Gradient in Desert Soils

(2014) Raeid M. M. Abed et al.   MICROBIAL ECOLOGY

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Biodegradation of Used Engine Oil by a Methylotrophic Bacterium,Methylobacterium MesophilicumIsolated from Tropical Hydrocarbon-contaminated Soil

(2014) L. B. Salam et al.   PETROLEUM SCIENCE AND TECHNOLOGY

New Hydrocarbon Degradation Pathways in the Microbial Metagenome from Brazilian Petroleum Reservoirs

(2014) Isabel Natalia Sierra-García et al.   PLoS One

Crude Oil Treatment Leads to Shift of Bacterial Communities in Soils from the Deep Active Layer and Upper Permafrost along the China-Russia Crude Oil Pipeline Route

(2014) Sizhong Yang et al.   PLoS One

Bacterial Community Response to Petroleum Hydrocarbon Amendments in Freshwater, Marine, and Hypersaline Water-Containing Microcosms

(2013) Diogo Jurelevicius et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparison of 26 Sphingomonad Genomes Reveals Diverse Environmental Adaptations and Biodegradative Capabilities

(2013) Frank O. Aylward et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Predictable bacterial composition and hydrocarbon degradation in Arctic soils following diesel and nutrient disturbance

(2013) Terrence H Bell et al.   ISME Journal

Taxonomic Profiling and Metagenome Analysis of a Microbial Community from a Habitat Contaminated with Industrial Discharges

(2013) Varun Shah et al.   MICROBIAL ECOLOGY

The Potential of Metagenomic Approaches for Understanding Soil Microbial Processes

(2013) David D. Myrold et al.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL

Impact of Long-Term Diesel Contamination on Soil Microbial Community Structure

(2012) Nora B. Sutton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biocatalytic characterization of a short-chain alcohol dehydrogenase with broad substrate specificity from thermophilic Carboxydothermus hydrogenoformans

(2012) Shuo Zhou et al.   BIOTECHNOLOGY LETTERS

Contrasted resistance of stone-dwelling Geodermatophilaceae species to stresses known to give rise to reactive oxygen species

(2012) Maher Gtari et al.   FEMS MICROBIOLOGY ECOLOGY

Geodermatophilus soli sp. nov. and Geodermatophilus terrae sp. nov., two actinobacteria isolated from grass soil

(2012) L. Jin et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Complete Genome Sequence of Alcanivorax dieselolei Type Strain B5

(2012) Qiliang Lai et al.   JOURNAL OF BACTERIOLOGY

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Metagenomic Analysis of the Bioremediation of Diesel-Contaminated Canadian High Arctic Soils

(2012) Etienne Yergeau et al.   PLoS One

PCR Biases Distort Bacterial and Archaeal Community Structure in Pyrosequencing Datasets

(2012) Ameet J. Pinto et al.   PLoS One

Pyrosequencing Investigation into the Bacterial Community in Permafrost Soils along the China-Russia Crude Oil Pipeline (CRCOP)

(2012) Sizhong Yang et al.   PLoS One

Characterization of the bacterial archaeal diversity in hydrocarbon-contaminated soil

(2012) De-Chao Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Hydrocarbon-Degrading Bacteria and the Bacterial Community Response in Gulf of Mexico Beach Sands Impacted by the Deepwater Horizon Oil Spill

(2011) Joel E. Kostka et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Efflux Permease CgAcr3-1 ofCorynebacterium glutamicumIs an Arsenite-specific Antiporter

(2011) Almudena F. Villadangos et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Methylmalonate-semialdehyde Dehydrogenase fromBacillus subtilis

(2011) François Talfournier et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Mangrove Bacterial Diversity and the Impact of Oil Contamination Revealed by Pyrosequencing: Bacterial Proxies for Oil Pollution

(2011) Henrique Fragoso dos Santos et al.   PLoS One

Geodermatophilus ruber sp. nov., isolated from rhizosphere soil of a medicinal plant

(2010) Y.-Q. Zhang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Examining the global distribution of dominant archaeal populations in soil

(2010) Scott T Bates et al.   ISME Journal

Biodegradation of Organic Pollutants by Halophilic Bacteria and Archaea

(2010) Sylvie Le Borgne et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Evaluation of bacterial strains isolated from oil-contaminated soil for production of polyhydroxyalkanoic acids (PHA)

(2010) Jyotsana Dalal et al.   PEDOBIOLOGIA

Degradation of alkanes by bacteria

(2009) Fernando Rojo   ENVIRONMENTAL MICROBIOLOGY

Bacteria with dual resistance to elevated concentrations of heavy metals and antibiotics in Nigerian contaminated systems

(2009) Ganiyu O. Oyetibo et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Microarray-based analysis of microbial functional diversity along an oil contamination gradient in oil field

(2009) Yuting Liang et al.   FEMS MICROBIOLOGY ECOLOGY

Novel organization of aromatic degradation pathway genes in a microbial community as revealed by metagenomic analysis

(2009) Hikaru Suenaga et al.   ISME Journal

Degradation of chloroaromatics by Pseudomonas putida GJ31: assembled route for chlorobenzene degradation encoded by clusters on plasmid pKW1 and the chromosome

(2009) M. Kunze et al.   MICROBIOLOGY-SGM

Tandem affinity purification of miRNA target mRNAs (TAP-Tar)

(2009) Nora Nonne et al.   NUCLEIC ACIDS RESEARCH

Advances in the field of high-molecular-weight polycyclic aromatic hydrocarbon biodegradation by bacteria

(2009) Robert A. Kanaly et al.   Microbial Biotechnology

Role of plant growth promoting rhizobacteria in the remediation of metal contaminated soils

(2008) Mohammad Saghir Khan et al.   Environmental Chemistry Letters

Characterization of Motor Lubricating Oils and Their Oil–Water Partition

(2008) Shan-Tan Lu et al.   ENVIRONMENTAL FORENSICS

Metabolic and bacterial diversity in soils historically contaminated by heavy metals and hydrocarbons

(2008) Astrid Vivas et al.   JOURNAL OF ENVIRONMENTAL MONITORING