Unveiling microbial interactions in stratified mat communities from a warm saline shallow pond

The bright side of microbial dark matter: lessons learned from the uncultivated majority

(2016) Lindsey Solden et al.   CURRENT OPINION IN MICROBIOLOGY

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

(2016) Sophie Weiss et al.   ISME Journal

High occurrence of Pacearchaeota and Woesearchaeota (Archaea superphylum DPANN) in the surface waters of oligotrophic high-altitude lakes

(2016) Rudiger Ortiz-Alvarez et al.   Environmental Microbiology Reports

Lokiarchaeon is hydrogen dependent

(2016) Filipa L. Sousa et al.   Nature Microbiology

New multi-scale perspectives on the stromatolites of Shark Bay, Western Australia

(2016) E. P. Suosaari et al.   Scientific Reports

Cyanobacteria in hypersaline environments: biodiversity and physiological properties

(2015) Aharon Oren   BIODIVERSITY AND CONSERVATION

Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling

(2015) Cindy J. Castelle et al.   CURRENT BIOLOGY

Insights in the ecology and evolutionary history of the Miscellaneous Crenarchaeotic Group lineage

(2015) Mireia Fillol et al.   ISME Journal

Marked seasonality and high spatial variability of protist communities in shallow freshwater systems

(2015) Marianne Simon et al.   ISME Journal

Microbial dark matter ecogenomics reveals complex synergistic networks in a methanogenic bioreactor

(2015) Masaru K Nobu et al.   ISME Journal

Bacterial Diversity in Microbial Mats and Sediments from the Atacama Desert

(2015) Maria Cecilia Rasuk et al.   MICROBIAL ECOLOGY

Unusual biology across a group comprising more than 15% of domain Bacteria

(2015) Christopher T. Brown et al.   NATURE

Complex archaea that bridge the gap between prokaryotes and eukaryotes

(2015) Anja Spang et al.   NATURE

Niche differentiation of bacterial communities at a millimeter scale in Shark Bay microbial mats

(2015) Hon Lun Wong et al.   Scientific Reports

Compact graphical representation of phylogenetic data and metadata with GraPhlAn

(2015) Francesco Asnicar et al.   PeerJ

Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria

(2015) Brett J Baker et al.   Microbiome

In Silico Analysis of the Metabolic Potential and Niche Specialization of Candidate Phylum "Latescibacteria" (WS3)

(2015) Noha H. Youssef et al.   PLoS One

Characterization of bacterial diversity associated with microbial mats, gypsum evaporites and carbonate microbialites in thalassic wetlands: Tebenquiche and La Brava, Salar de Atacama, Chile

(2014) M. E. Farías et al.   EXTREMOPHILES

Rooting the Domain Archaea by Phylogenomic Analysis Supports the Foundation of the New Kingdom Proteoarchaeota

(2014) Céline Petitjean et al.   Genome Biology and Evolution

Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer

(2014) Kelly C Wrighton et al.   ISME Journal

Microbial Characterization of Microbial Ecosystems Associated to Evaporites Domes of Gypsum in Salar de Llamara in Atacama Desert

(2014) Maria Cecilia Rasuk et al.   MICROBIAL ECOLOGY

Evidence of Novel Phylogenetic Lineages of Methanogenic Archaea from Hypersaline Microbial Mats

(2014) José Q. García-Maldonado et al.   MICROBIAL ECOLOGY

Global Patterns of Abundance, Diversity and Community Structure of the Aminicenantes (Candidate Phylum OP8)

(2014) Ibrahim F. Farag et al.   PLoS One

Active colonization dynamics and diversity patterns are influenced by dendritic network connectivity and species interactions

(2014) Mathew Seymour et al.   Ecology and Evolution

Phylogenomic Data Support a Seventh Order of Methylotrophic Methanogens and Provide Insights into the Evolution of Methanogenesis

(2013) Guillaume Borrel et al.   Genome Biology and Evolution

Genetic and functional properties of uncultivated MCG archaea assessed by metagenome and gene expression analyses

(2013) Jun Meng et al.   ISME Journal

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Predominant archaea in marine sediments degrade detrital proteins

(2013) Karen G. Lloyd et al.   NATURE

Coastal Microbial Mat Diversity along a Natural Salinity Gradient

(2013) Henk Bolhuis et al.   PLoS One

Phylogenetic Analysis of a Microbialite-Forming Microbial Mat from a Hypersaline Lake of the Kiritimati Atoll, Central Pacific

(2013) Dominik Schneider et al.   PLoS One

“Candidatus Sonnebornia yantaiensis”, a member of candidate division OD1, as intracellular bacteria of the ciliated protist Paramecium bursaria (Ciliophora, Oligohymenophorea)

(2013) Jun Gong et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Small Genomes and Sparse Metabolisms of Sediment-Associated Bacteria from Four Candidate Phyla

(2013) R. S. Kantor et al.   mBio

Microbial mats: an ecological niche for fungi

(2013) Sharon A. Cantrell et al.   Frontiers in Microbiology

Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat

(2012) J Kirk Harris et al.   ISME Journal

Accuracy of protist diversity assessments: morphology compared with cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study

(2012) Charles Bachy et al.   ISME Journal

Distinct and diverse anaerobic bacterial communities in boreal lakes dominated by candidate division OD1

(2012) Sari Peura et al.   ISME Journal

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla

(2012) K. C. Wrighton et al.   SCIENCE

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

Into the deep: New discoveries at the base of the green plant phylogeny

(2011) Frederik Leliaert et al.   BIOESSAYS

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

Analysis of bacterial and archaeal diversity in coastal microbial mats using massive parallel 16S rRNA gene tag sequencing

(2011) Henk Bolhuis et al.   ISME Journal

Microheliella maris (Microhelida ord. n.), an Ultrastructurally Highly Distinctive New Axopodial Protist Species and Genus, and the Unity of Phylum Heliozoa

(2011) Akinori Yabuki et al.   PROTIST

Origin and Diversification of Eukaryotes

(2010) Laura A. Katz   Annual Review of Microbiology

Halophiles 2010: Life in Saline Environments

(2010) Y. Ma et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

(2010) Alexis Criscuolo et al.   BMC EVOLUTIONARY BIOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Palpitomonas bilix gen. et sp. nov.: A Novel Deep-branching Heterotroph Possibly Related to Archaeplastida or Hacrobia

(2010) Akinori Yabuki et al.   PROTIST

Microbial Species Richness and Metabolic Activities in Hypersaline Microbial Mats: Insight into Biosignature Formation Through Lithification

(2009) Laura K. Baumgartner et al.   ASTROBIOLOGY

Bacterial, archaeal and eukaryotic diversity of smooth and pustular microbial mat communities in the hypersaline lagoon of Shark Bay

(2009) M. A. ALLEN et al.   Geobiology

Caldithrix palaeochoryensis sp. nov., a thermophilic, anaerobic, chemo-organotrophic bacterium from a geothermally heated sediment, and emended description of the genus Caldithrix

(2009) M. L. Miroshnichenko et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Extremely halophilic microbial communities in anaerobic sediments from a solar saltern

(2009) Arantxa López-López et al.   Environmental Microbiology Reports

Diversity and Stratification of Archaea in a Hypersaline Microbial Mat

(2008) C. E. Robertson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Processes of carbonate precipitation in modern microbial mats

(2008) Christophe Dupraz et al.   EARTH-SCIENCE REVIEWS

Novelty and spatio–temporal heterogeneity in the bacterial diversity of hypersaline Lake Tebenquiche (Salar de Atacama)

(2008) Cecilia Demergasso et al.   EXTREMOPHILES

Lipid biomarkers, pigments and cyanobacterial diversity of microbial mats across intertidal flats of the arid coast of the Arabian Gulf (Abu Dhabi, UAE)

(2008) Raeid M.M. Abed et al.   FEMS MICROBIOLOGY ECOLOGY

Lipid biomarker and phylogenetic analyses to reveal archaeal biodiversity and distribution in hypersaline microbial mat and underlying sediment

(2008) L. L. JAHNKE et al.   Geobiology