Transcriptional characterization of Vibrio fischeri during colonization of juvenile Euprymna scolopes

Helicobacter pylori infection: An overview of bacterial virulence factors and pathogenesis

(2016) Cheng-Yen Kao et al.   Biomedical Journal

Animal models to study the pathogenesis of human and animal Clostridium perfringens infections

(2015) Francisco A. Uzal et al.   VETERINARY MICROBIOLOGY

A Single Host-Derived Glycan Impacts Key Regulatory Nodes of Symbiont Metabolism in a Coevolved Mutualism

(2015) Min Pan et al.   mBio

Intestinal Colonization Dynamics of Vibrio cholerae

(2015) Salvador Almagro-Moreno et al.   PLoS Pathogens

Low-cost, low-input RNA-seq protocols perform nearly as well as high-input protocols

(2015) Peter A. Combs et al.   PeerJ

The Importance of Microbes in Animal Development: Lessons from the Squid-Vibrio Symbiosis

(2014) Margaret J. McFall-Ngai   Annual Review of Microbiology

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Shaping the microenvironment: evidence for the influence of a host galaxin on symbiont acquisition and maintenance in the squid-vibrio symbiosis

(2014) Elizabeth A. C. Heath-Heckman et al.   ENVIRONMENTAL MICROBIOLOGY

Bright luminescence ofVibrio fischeriaconitase mutants reveals a connection between citrate and the Gac/Csr regulatory system

(2014) Alecia N. Septer et al.   MOLECULAR MICROBIOLOGY

Global discovery of colonization determinants in the squid symbiontVibrio fischeri

(2014) John F. Brooks et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The chemistry of negotiation: Rhythmic, glycan-driven acidification in a symbiotic conversation

(2014) Julia A. Schwartzman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Host plant peptides elicit a transcriptional response to control theSinorhizobium meliloticell cycle during symbiosis

(2014) Jon Penterman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The oxidative environment: a mediator of interspecies communication that drives symbiosis evolution

(2014) Y. Mone et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Modulation of immune development and function by intestinal microbiota

(2014) Agnieszka M. Kabat et al.   TRENDS IN IMMUNOLOGY

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Initial Symbiont Contact Orchestrates Host-Organ-wide Transcriptional Changes that Prime Tissue Colonization

(2013) Natacha Kremer et al.   Cell Host & Microbe

Distinct antimicrobial peptide expression determines host species-specific bacterial associations

(2013) S. Franzenburg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Animals in a bacterial world, a new imperative for the life sciences

(2013) Margaret McFall-Ngai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial Bioluminescence Regulates Expression of a Host Cryptochrome Gene in the Squid-Vibrio Symbiosis

(2013) E. A. C. Heath-Heckman et al.   mBio

Genetic determinants of swimming motility in the squid light-organ symbiontVibrio fischeri

(2013) Caitlin A. Brennan et al.   MicrobiologyOpen

Expression profiling reveals Spot 42 small RNA as a key regulator in the central metabolism of Aliivibrio salmonicida

(2012) Geir Å Hansen et al.   BMC GENOMICS

Shedding light on bioluminescence regulation in Vibrio fischeri

(2012) Tim Miyashiro et al.   MOLECULAR MICROBIOLOGY

Knowing your friends: invertebrate innate immunity fosters beneficial bacterial symbioses

(2012) Spencer V. Nyholm et al.   NATURE REVIEWS MICROBIOLOGY

Coordination of the Arc Regulatory System and Pheromone-Mediated Positive Feedback in Controlling the Vibrio fischeri lux Operon

(2012) Alecia N. Septer et al.   PLoS One

A Symbiotic View of Life: We Have Never Been Individuals

(2012) Scott F. Gilbert et al.   QUARTERLY REVIEW OF BIOLOGY

LBP/BPI proteins and their relatives: conservation over evolution and roles in mutualism

(2011) Benjamin C. Krasity et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Structure and Function of YghU, a Nu-Class Glutathione Transferase Related to YfcG fromEscherichia coli

(2011) Nina V. Stourman et al.   BIOCHEMISTRY

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

Effects of Amino Acid Supplementation on Porin Expression and ToxR Levels in Vibrio cholerae

(2011) Alexandra R. Mey et al.   INFECTION AND IMMUNITY

Efflux inhibition by selective serotonin reuptake inhibitors in Escherichia coli

(2011) Jürgen A. Bohnert et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Sensor Kinase RscS Induces the Production of Antigenically Distinct Outer Membrane Vesicles That Depend on the Symbiosis Polysaccharide Locus in Vibrio fischeri

(2011) S. Shibata et al.   JOURNAL OF BACTERIOLOGY

The N-acetyl-d-glucosamine repressor NagC of Vibrio fischeri facilitates colonization of Euprymna scolopes

(2011) Tim Miyashiro et al.   MOLECULAR MICROBIOLOGY

The Antibacterial Lectin RegIII  Promotes the Spatial Segregation of Microbiota and Host in the Intestine

(2011) S. Vaishnava et al.   SCIENCE

Drosophila Microbiome Modulates Host Developmental and Metabolic Homeostasis via Insulin Signaling

(2011) S. C. Shin et al.   SCIENCE

Diversity and Genomes of Uncultured Microbial Symbionts in the Termite Gut

(2010) Yuichi HONGOH   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

The major outer membrane protein OmpU of Vibrio splendidus contributes to host antimicrobial peptide resistance and is required for virulence in the oyster Crassostrea gigas

(2010) Marylise Duperthuy et al.   ENVIRONMENTAL MICROBIOLOGY

The alternative oxidase (AOX) gene in Vibrio fischeri is controlled by NsrR and upregulated in response to nitric oxide

(2010) Anne K. Dunn et al.   MOLECULAR MICROBIOLOGY

H-NOX-mediated nitric oxide sensing modulates symbiotic colonization by Vibrio fischeri

(2010) Y. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional patterns in both host and bacterium underlie a daily rhythm of anatomical and metabolic change in a beneficial symbiosis

(2010) A. M. Wier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Immune Responses to the Microbiota at the Intestinal Mucosal Surface

(2009) Breck A. Duerkop et al.   IMMUNITY

Microbiology: Tinker, bacteria, eukaryote, spy

(2009) Asher Mullard   NATURE

Vibrio cholerae RND Family Efflux Systems Are Required for Antimicrobial Resistance, Optimal Virulence Factor Production, and Colonization of the Infant Mouse Small Intestine

(2008) X. R. Bina et al.   INFECTION AND IMMUNITY

Inter-kingdom signalling: communication between bacteria and their hosts

(2008) David T. Hughes et al.   NATURE REVIEWS MICROBIOLOGY