Untangling the cecal microbiota of feral chickens by culturomic and metagenomic analyses

Evaluating the core microbiota in complex communities: A systematic investigation

(2017) Carmen Astudillo-García et al.   ENVIRONMENTAL MICROBIOLOGY

Ménage à trois in the human gut: interactions between host, bacteria and phages

(2017) Mohammadali Khan Mirzaei et al.   NATURE REVIEWS MICROBIOLOGY

Insights into the biodiversity of the gut microbiota of broiler chickens

(2016) Leonardo Mancabelli et al.   ENVIRONMENTAL MICROBIOLOGY

When chickens go wild

(2016) Ewen Callaway   NATURE

Culturing of ‘unculturable’ human microbiota reveals novel taxa and extensive sporulation

(2016) Hilary P. Browne et al.   NATURE

Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability

(2016) Moran Yassour et al.   Science Translational Medicine

Feralisation targets different genomic loci to domestication in the chicken

(2016) M. Johnsson et al.   Nature Communications

Dissemination of Antimicrobial Resistance in Microbial Ecosystems through Horizontal Gene Transfer

(2016) Christian J. H. von Wintersdorff et al.   Frontiers in Microbiology

Culture of previously uncultured members of the human gut microbiota by culturomics

(2016) Jean-Christophe Lagier et al.   Nature Microbiology

The Rebirth of Culture in Microbiology through the Example of Culturomics To Study Human Gut Microbiota

(2015) Jean-Christophe Lagier et al.   CLINICAL MICROBIOLOGY REVIEWS

The gut microbiota and host health: a new clinical frontier

(2015) Julian R Marchesi et al.   GUT

Analyses of Intestinal Microbiota: Culture versus Sequencing: Figure 1

(2015) Andreas Hiergeist et al.   ILAR JOURNAL

Mixed ancestry and admixture in Kauai's feral chickens: invasion of domestic genes into ancient Red Junglefowl reservoirs

(2015) E. Gering et al.   MOLECULAR ECOLOGY

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

(2015) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

Deciphering chicken gut microbial dynamics based on high-throughput 16S rRNA metagenomics analyses

(2015) Mohd Mohd Shaufi et al.   Gut Pathogens

Characterising the bacterial microbiota across the gastrointestinal tracts of dairy cattle: membership and potential function

(2015) Shengyong Mao et al.   Scientific Reports

Microbiota of the chicken gastrointestinal tract: influence on health, productivity and disease

(2014) Dragana Stanley et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

The chicken gastrointestinal microbiome

(2014) Brian B. Oakley et al.   FEMS MICROBIOLOGY LETTERS

Extensive Microbial and Functional Diversity within the Chicken Cecal Microbiome

(2014) Martin J. Sergeant et al.   PLoS One

Characterizing the avian gut microbiota: membership, driving influences, and potential function

(2014) David W. Waite et al.   Frontiers in Microbiology

The Comprehensive Antibiotic Resistance Database

(2013) Andrew G. McArthur et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism

(2013) Gijs den Besten et al.   JOURNAL OF LIPID RESEARCH

Assessing the Fecal Microbiota: An Optimized Ion Torrent 16S rRNA Gene-Based Analysis Protocol

(2013) Christian Milani et al.   PLoS One

Identification of chicken intestinal microbiota correlated with the efficiency of energy extraction from feed

(2013) Dragana Stanley et al.   VETERINARY MICROBIOLOGY

Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota

(2013) Yongfei Hu et al.   Nature Communications

The Impact of the Gut Microbiota on Human Health: An Integrative View

(2012) Jose C. Clemente et al.   CELL

The adult intestinal core microbiota is determined by analysis depth and health status

(2012) A. Salonen et al.   CLINICAL MICROBIOLOGY AND INFECTION

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Genomic approaches to studying the human microbiota

(2012) George M. Weinstock   NATURE

Techniques used to characterize the gut microbiota: a guide for the clinician

(2012) Marianne H. Fraher et al.   Nature Reviews Gastroenterology & Hepatology

Human Gut Microbiota: Repertoire and Variations

(2012) Jean-Christophe Lagier et al.   Frontiers in Cellular and Infection Microbiology

RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data

(2011) Y. Zhao et al.   BIOINFORMATICS

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

(2011) R. Caspi et al.   NUCLEIC ACIDS RESEARCH

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Tracking Acquired Antibiotic Resistance in Commensal Bacteria of Galápagos Land Iguanas: No Man, No Resistance

(2010) Maria Cristina Thaller et al.   PLoS One

Exploring the Diversity of the Bifidobacterial Population in the Human Intestinal Tract

(2009) F. Turroni et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE