Free-living chemoautotrophic and particle-attached heterotrophic prokaryotes dominate microbial assemblages along a pelagic redox gradient

Thaumarchaeal ecotype distributions across the equatorial Pacific Ocean and their potential roles in nitrification and sinking flux attenuation

(2017) Alyson E. Santoro et al.   LIMNOLOGY AND OCEANOGRAPHY

Cultivation of a chemoautotroph from the SUP05 clade of marine bacteria that produces nitrite and consumes ammonium

(2016) Vega Shah et al.   ISME Journal

Genomic insights into members of the candidate phylum Hyd24-12 common in mesophilic anaerobic digesters

(2016) Rasmus Hansen Kirkegaard et al.   ISME Journal

Niskin bottle sample collection aliases microbial community composition and biogeochemical interpretation

(2016) Elizabeth A. Suter et al.   LIMNOLOGY AND OCEANOGRAPHY

SAR11 bacteria linked to ocean anoxia and nitrogen loss

(2016) Despina Tsementzi et al.   NATURE

Ammonium and nitrite oxidation at nanomolar oxygen concentrations in oxygen minimum zone waters

(2016) Laura A. Bristow et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Archaea catalyze iron-dependent anaerobic oxidation of methane

(2016) Katharina F. Ettwig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea

(2016) Elisabeth M. Bik et al.   Nature Communications

Anaerobic Nitrogen Turnover by Sinking Diatom Aggregates at Varying Ambient Oxygen Levels

(2016) Peter Stief et al.   Frontiers in Microbiology

Co-occurrence Analysis of Microbial Taxa in the Atlantic Ocean Reveals High Connectivity in the Free-Living Bacterioplankton

(2016) Mathias Milici et al.   Frontiers in Microbiology

Critical biogeochemical functions in the subsurface are associated with bacteria from new phyla and little studied lineages

(2015) Laura A. Hug et al.   ENVIRONMENTAL MICROBIOLOGY

Ecophysiology of uncultivated marine euryarchaea is linked to particulate organic matter

(2015) William D Orsi et al.   ISME Journal

Global diversity and biogeography of deep-sea pelagic prokaryotes

(2015) Guillem Salazar et al.   ISME Journal

Size-fraction partitioning of community gene transcription and nitrogen metabolism in a marine oxygen minimum zone

(2015) Sangita Ganesh et al.   ISME Journal

Particle-association lifestyle is a phylogenetically conserved trait in bathypelagic prokaryotes

(2015) Guillem Salazar et al.   MOLECULAR ECOLOGY

Expanded metabolic versatility of ubiquitous nitrite-oxidizing bacteria from the genusNitrospira

(2015) Hanna Koch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Particle-Associated Differ from Free-Living Bacteria in Surface Waters of the Baltic Sea

(2015) Angelika Rieck et al.   Frontiers in Microbiology

Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre

(2015) Kristina M. Fontanez et al.   Frontiers in Microbiology

Comparison of bacterial communities on limnic versus coastal marine particles reveals profound differences in colonization

(2014) Mina Bižić-Ionescu et al.   ENVIRONMENTAL MICROBIOLOGY

A guide to statistical analysis in microbial ecology: a community-focused, living review of multivariate data analyses

(2014) Pier Luigi Buttigieg et al.   FEMS MICROBIOLOGY ECOLOGY

Unveiling microbial activities along the halocline of Thetis, a deep-sea hypersaline anoxic basin

(2014) Maria G Pachiadaki et al.   ISME Journal

Interannual and Subdecadal Variability in the Nutrient Geochemistry of the Cariaco Basin

(2014) Mary Scranton et al.   OCEANOGRAPHY

Oxygen at Nanomolar Levels Reversibly Suppresses Process Rates and Gene Expression in Anammox and Denitrification in the Oxygen Minimum Zone off Northern Chile

(2014) Tage Dalsgaard et al.   mBio

SUP05 Dominates the Gammaproteobacterial Sulfur Oxidizer Assemblages in Pelagic Redoxclines of the Central Baltic and Black Seas

(2013) Sabine Glaubitz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metabolic flexibility of enigmatic SAR324 revealed through metagenomics and metatranscriptomics

(2013) Cody S. Sheik et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial community composition in a large marine anoxic basin: a Cariaco Basin time-series survey

(2013) Maria J. Rodriguez-Mora et al.   FEMS MICROBIOLOGY ECOLOGY

Genomic properties of Marine Group A bacteria indicate a role in the marine sulfur cycle

(2013) Jody J Wright et al.   ISME Journal

Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone

(2013) Sangita Ganesh et al.   ISME Journal

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Contrasting genomic properties of free-living and particle-attached microbial assemblages within a coastal ecosystem

(2013) Maria W. Smith et al.   Frontiers in Microbiology

Taxonomic composition of the particle-attached and free-living bacterial assemblages in the Northwest Mediterranean Sea analyzed by pyrosequencing of the 16S rRNA

(2013) Bibiana G. Crespo et al.   MicrobiologyOpen

Free-living and aggregate-associated Planctomycetes in the Black Sea

(2012) Clara A. Fuchsman et al.   FEMS MICROBIOLOGY ECOLOGY

Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic

(2012) Lisa Zeigler Allen et al.   ISME Journal

Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments

(2012) Kyoko Kubo et al.   ISME Journal

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Stimulation of Autotrophic Denitrification by Intrusions of the Bosporus Plume into the Anoxic Black Sea

(2012) Clara A. Fuchsman et al.   Frontiers in Microbiology

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

The conundrum between chemoautotrophic production and reductant and oxidant supply: A case study from the Cariaco Basin

(2011) Xiaona N. Li et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Microbial metatranscriptomics in a permanent marine oxygen minimum zone

(2011) Frank J. Stewart et al.   ENVIRONMENTAL MICROBIOLOGY

Abundance and phylogenetic identity of archaeoplankton in the permanent oxygen minimum zone of the eastern tropical South Pacific

(2011) Lucy Belmar et al.   FEMS MICROBIOLOGY ECOLOGY

Metabolic strategies of free-living and aggregate-associated bacterial communities inferred from biologic and chemical profiles in the Black Sea suboxic zone

(2011) Clara A. Fuchsman et al.   FEMS MICROBIOLOGY ECOLOGY

Evidence for anaerobic oxidation of methane in sediments of  a freshwater system (Lago di Cadagno)

(2011) Carsten J. Schubert et al.   FEMS MICROBIOLOGY ECOLOGY

Microbial nitrate respiration – Genes, enzymes and environmental distribution

(2011) Beate Kraft et al.   JOURNAL OF BIOTECHNOLOGY

Oxygen Sensitivity of Anammox and Coupled N-Cycle Processes in Oxygen Minimum Zones

(2011) Tim Kalvelage et al.   PLoS One

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

(2011) B. K. Swan et al.   SCIENCE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Diversity of active chemolithoautotrophic prokaryotes in the sulfidic zone of a Black Sea pelagic redoxcline as determined by rRNA-based stable isotope probing

(2010) Sabine Glaubitz et al.   FEMS MICROBIOLOGY ECOLOGY

Particulate sulfur species in the water column of the Cariaco Basin

(2010) Xiaona Li et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Relevance of a crenarchaeotal subcluster related to Candidatus Nitrosopumilus maritimus to ammonia oxidation in the suboxic zone of the central Baltic Sea

(2010) Matthias Labrenz et al.   ISME Journal

Spatiotemporal dynamics of bacterial populations in the anoxic Cariaco Basin

(2010) Xueju Lin et al.   LIMNOLOGY AND OCEANOGRAPHY

A Cryptic Sulfur Cycle in Oxygen-Minimum-Zone Waters off the Chilean Coast

(2010) D. E. Canfield et al.   SCIENCE

Compositional differences in particle-associated and free-living microbial assemblages from an extreme deep-ocean environment

(2010) Emiley A. Eloe et al.   Environmental Microbiology Reports

Anaerobic Oxidation of Methane: Progress with an Unknown Process

(2009) Katrin Knittel et al.   Annual Review of Microbiology

Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata

(2009) Shinichi Sunagawa et al.   ISME Journal

Metagenome of a Versatile Chemolithoautotroph from Expanding Oceanic Dead Zones

(2009) D. A. Walsh et al.   SCIENCE

Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea

(2008) Craig A Carlson et al.   ISME Journal

Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions

(2008) Ana-Belen Martin-Cuadrado et al.   ISME Journal

A novel archaeal group in the phylum Crenarchaeota found unexpectedly in an eukaryotic survey in the Cariaco Basin

(2008) Sun-Ok Jeon et al.   JOURNAL OF MICROBIOLOGY

Relationship of sulfur speciation to hydrographic conditions and chemoautotrophic production in the Cariaco Basin

(2008) Xiaona Li et al.   MARINE CHEMISTRY

Detoxification of sulphidic African shelf waters by blooming chemolithotrophs

(2008) Gaute Lavik et al.   NATURE

Microbial community gene expression in ocean surface waters

(2008) J. Frias-Lopez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA