Single-cell genomics based on Raman sorting reveals novel carotenoid-containing bacteria in the Red Sea

Towards high-throughput microfluidic Raman-activated cell sorting

(2015) Qiang Zhang et al.   ANALYST

Raman-Activated Cell Sorting Based on Dielectrophoretic Single-Cell Trap and Release

(2015) Peiran Zhang et al.   ANALYTICAL CHEMISTRY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Single cell biotechnology to shed a light on biological ‘dark matter’ in nature

(2015) Wei E. Huang et al.   Microbial Biotechnology

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Impact of single-cell genomics and metagenomics on the emerging view of extremophile “microbial dark matter”

(2014) Brian P. Hedlund et al.   EXTREMOPHILES

An Expanded Genomic Representation of the Phylum Cyanobacteria

(2014) Rochelle M. Soo et al.   Genome Biology and Evolution

Obtaining genomes from uncultivated environmental microorganisms using FACS–based single-cell genomics

(2014) Christian Rinke et al.   Nature Protocols

Tracking heavy water (D2O) incorporation for identifying and sorting active microbial cells

(2014) David Berry et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Raman Activated Cell Ejection for Isolation of Single Cells

(2013) Yun Wang et al.   ANALYTICAL CHEMISTRY

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Raman-Activated Cell Counting for Profiling Carbon Dioxide Fixing Microorganisms

(2012) Mengqiu Li et al.   JOURNAL OF PHYSICAL CHEMISTRY A

Genomic sequencing of uncultured microorganisms from single cells

(2012) Roger S. Lasken   NATURE REVIEWS MICROBIOLOGY

Genomics of the Proteorhodopsin-Containing Marine Flavobacterium Dokdonia sp. Strain MED134

(2011) José M. González et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Squalene-Hopene Cyclases

(2011) Gabriele Siedenburg et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Single cell Raman spectroscopy for cell sorting and imaging

(2011) Mengqiu Li et al.   CURRENT OPINION IN BIOTECHNOLOGY

Rapid resonance Raman microspectroscopy to probe carbon dioxide fixation by single cells in microbial communities

(2011) Mengqiu Li et al.   ISME Journal

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

(2011) B. K. Swan et al.   SCIENCE

Application of Raman Microscopy for Simultaneous and Quantitative Evaluation of Multiple Intracellular Polymers Dynamics Functionally Relevant to Enhanced Biological Phosphorus Removal Processes

(2010) Nehreen Majed et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Resonance Raman spectroscopy

(2009) Bruno Robert   PHOTOSYNTHESIS RESEARCH

Raman tweezers sorting of single microbial cells

(2009) Wei E. Huang et al.   Environmental Microbiology Reports

Resolving Genetic Functions within Microbial Populations: In Situ Analyses Using rRNA and mRNA Stable Isotope Probing Coupled with Single-Cell Raman-Fluorescence In Situ Hybridization

(2008) W. E. Huang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY