Evolution of atypical enteropathogenic E. coli by repeated acquisition of LEE pathogenicity island variants

ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes

(2015) Xavier Didelot et al.   PLoS Computational Biology

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Identification of enterotoxigenic Escherichia coli (ETEC) clades with long-term global distribution

(2014) Astrid von Mentzer et al.   NATURE GENETICS

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

(2014) Michael Inouye et al.   Genome Medicine

Recent Advances in Understanding Enteric Pathogenic Escherichia coli

(2013) M. A. Croxen et al.   CLINICAL MICROBIOLOGY REVIEWS

Inhibition of death receptor signaling by bacterial gut pathogens

(2013) Cristina Giogha et al.   CYTOKINE & GROWTH FACTOR REVIEWS

Burden and aetiology of diarrhoeal disease in infants and young children in developing countries (the Global Enteric Multicenter Study, GEMS): a prospective, case-control study

(2013) Karen L Kotloff et al.   LANCET

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

A type III effector antagonizes death receptor signalling during bacterial gut infection

(2013) Jaclyn S. Pearson et al.   NATURE

Combating enteropathogenic Escherichia coli (EPEC) infections: the way forward

(2013) Michael S. Donnenberg et al.   TRENDS IN MICROBIOLOGY

Subversion of trafficking, apoptosis, and innate immunity by type III secretion system effectors

(2013) Benoit Raymond et al.   TRENDS IN MICROBIOLOGY

Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli

(2012) Xavier Didelot et al.   BMC GENOMICS

Diagnostic Microbiologic Methods in the GEMS-1 Case/Control Study

(2012) Sandra Panchalingam et al.   CLINICAL INFECTIOUS DISEASES

Genetic diversity of locus of enterocyte effacement genes of enteropathogenic Escherichia coli isolated from Peruvian children

(2012) C. A. Contreras et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks

(2012) Daniel H. Huson et al.   SYSTEMATIC BIOLOGY

The Non-Flagellar Type III Secretion System Evolved from the Bacterial Flagellum and Diversified into Host-Cell Adapted Systems

(2012) Sophie S. Abby et al.   PLoS Genetics

Identification of genes differentially expressed during interaction of Mexican lime tree infected with "Candidatus Phytoplasma aurantifolia"

(2011) Maryam Zamharir et al.   BMC MICROBIOLOGY

Enteropathogenic Escherichia coli infection in children

(2011) Theresa J. Ochoa et al.   CURRENT OPINION IN INFECTIOUS DISEASES

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

LEEways: tales of EPEC, ATEC and EHEC

(2010) M. Alexander Schmidt   CELLULAR MICROBIOLOGY

RAMI: a tool for identification and characterization of phylogenetic clusters in microbial communities

(2009) Thomas Pommier et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The effector repertoire of enteropathogenic E. coli: ganging up on the host cell

(2009) Paul Dean et al.   CURRENT OPINION IN MICROBIOLOGY

An overview of atypical enteropathogenicEscherichia coli

(2009) Rodrigo T. Hernandes et al.   FEMS MICROBIOLOGY LETTERS

Comparative Analysis of the Locus of Enterocyte Effacement and Its Flanking Regions

(2009) D. Muller et al.   INFECTION AND IMMUNITY

Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli

(2009) Y. Ogura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Systematic Identification and Sequence Analysis of the Genomic Islands of the Enteropathogenic Escherichia coli Strain B171-8 by the Combined Use of Whole-Genome PCR Scanning and Fosmid Mapping

(2008) Y. Ogura et al.   JOURNAL OF BACTERIOLOGY