Genomic diversity in Onchocerca volvulus and its Wolbachia endosymbiont

Phylogenetic congruence and ecological coherence in terrestrial Thaumarchaeota

(2015) Eduard Vico Oton et al.   ISME Journal

Frequency-based haplotype reconstruction from deep sequencing data of bacterial populations

(2015) Sergio Pulido-Tamayo et al.   NUCLEIC ACIDS RESEARCH

The Contributions of Onchocerciasis Control and Elimination Programs toward the Achievement of the Millennium Development Goals

(2015) Caitlin Dunn et al.   PLoS Neglected Tropical Diseases

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

African Programme for Onchocerciasis Control 1995–2015: Updated Health Impact Estimates Based on New Disability Weights

(2014) Luc E. Coffeng et al.   PLoS Neglected Tropical Diseases

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Integrating phylogenetics, phylogeography and population genetics through genomes and evolutionary theory

(2013) Asher D. Cutter   MOLECULAR PHYLOGENETICS AND EVOLUTION

Indices of onchocerciasis transmission by different members of the Simulium damnosum complex conflict with the paradigm of forest and savanna parasite strains

(2012) Robert A. Cheke et al.   ACTA TROPICA

The genetics of sex chromosomes: evolution and implications for hybrid incompatibility

(2012) Norman A. Johnson et al.   Annals of the New York Academy of Sciences

Wolbachiafilarial interactions

(2012) Mark J. Taylor et al.   CELLULAR MICROBIOLOGY

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

The biogeography of mitochondrial and nuclear discordance in animals

(2012) DAVID P. L. TOEWS et al.   MOLECULAR ECOLOGY

Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity

(2012) Erik C Andersen et al.   NATURE GENETICS

The onchocerciasis chronicle: from the beginning to the end?

(2012) Andy Crump et al.   TRENDS IN PARASITOLOGY

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Elimination of onchocerciasis from Africa: possible?

(2011) Charles D. Mackenzie et al.   TRENDS IN PARASITOLOGY

Elimination of human onchocerciasis: History of progress and current feasibility using ivermectin (Mectizan®) monotherapy

(2010) E.W. Cupp et al.   ACTA TROPICA

Detecting Heteroplasmy from High-Throughput Sequencing of Complete Human Mitochondrial DNA Genomes

(2010) Mingkun Li et al.   AMERICAN JOURNAL OF HUMAN GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies

(2010) Dapeng Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

The Caenorhabditis chemoreceptor gene families

(2008) James H Thomas et al.   BMC BIOLOGY

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY