A HapMap leads to a Capsicum annuum SNP infinium array: a new tool for pepper breeding

Impact of imputation methods on the amount of genetic variation captured by a single-nucleotide polymorphism panel in soybeans

(2016) A. Xavier et al.   BMC BIOINFORMATICS

SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population

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Mapping of a Novel Race Specific Resistance Gene to Phytophthora Root Rot of Pepper (Capsicum annuum) Using Bulked Segregant Analysis Combined with Specific Length Amplified Fragment Sequencing Strategy

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Development, validation and genetic analysis of a large soybean SNP genotyping array

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Single-copy gene based 50 K SNP chip for genetic studies and molecular breeding in rice

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Ultra-High Density, Transcript-Based Genetic Maps of Pepper Define Recombination in the Genome and Synteny Among Related Species

(2015) Theresa Hill et al.   G3-Genes Genomes Genetics

Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp.

(2015) A. M. Hulse-Kemp et al.   G3-Genes Genomes Genetics

Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species

(2014) Seungill Kim et al.   NATURE GENETICS

Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization

(2014) C. Qin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ)

(2013) Martin Mascher et al.   PLANT JOURNAL

Characterization of Capsicum annuum Genetic Diversity and Population Structure Based on Parallel Polymorphism Discovery with a 30K Unigene Pepper GeneChip

(2013) Theresa A. Hill et al.   PLoS One

De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes

(2012) Hamid Ashrafi et al.   BMC GENOMICS

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

Transcriptome profiling and molecular marker discovery in red pepper, Capsicum annuum L. TF68

(2011) Fu-Hao Lu et al.   MOLECULAR BIOLOGY REPORTS

Genome sequence and analysis of the tuber crop potato

(2011) Xun Xu et al.   NATURE

Metabolite biodiversity in pepper (Capsicum) fruits of thirty-two diverse accessions: Variation in health-related compounds and implications for breeding

(2011) Yuni Wahyuni et al.   PHYTOCHEMISTRY

Transcriptome analysis and SNP/SSR marker information of red pepper variety YCM334 and Taean

(2011) Fu-Hao Lu et al.   SCIENTIA HORTICULTURAE

The Sequence Alignment/Map format and SAMtools

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