Emerging investigators series: microbial communities in full-scale drinking water distribution systems – a meta-analysis

Genomic analysis of 38 Legionella species identifies large and diverse effector repertoires

(2016) David Burstein et al.   NATURE GENETICS

The impact of sampling, PCR, and sequencing replication on discerning changes in drinking water bacterial community over diurnal time-scales

(2016) Quyen Melina Bautista-de los Santos et al.   WATER RESEARCH

Using Amplicon Sequencing To Characterize and Monitor Bacterial Diversity in Drinking Water Distribution Systems

(2015) Jennifer L. A. Shaw et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data: Fig. 1.

(2015) Kathrin P. Aßhauer et al.   BIOINFORMATICS

Drinking water microbiology — from measurement to management

(2015) Caitlin R Proctor et al.   CURRENT OPINION IN BIOTECHNOLOGY

Microbial biogeography of drinking water: patterns in phylogenetic diversity across space and time

(2015) Guus Roeselers et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial Community Shift Drives Antibiotic Resistance Promotion during Drinking Water Chlorination

(2015) Shuyu Jia et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Core-satellite populations and seasonality of water meter biofilms in a metropolitan drinking water distribution system

(2015) Fangqiong Ling et al.   ISME Journal

The activated sludge ecosystem contains a core community of abundant organisms

(2015) Aaron M Saunders et al.   ISME Journal

Successful test launch for nanopore sequencing

(2015) Nicholas J Loman et al.   NATURE METHODS

The drinking water treatment process as a potential source of affecting the bacterial antibiotic resistance

(2015) Xiaohui Bai et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Pyrosequencing analysis of bacterial diversity in dental unit waterlines

(2015) Damien Costa et al.   WATER RESEARCH

Dynamics of bacterial communities before and after distribution in a full-scale drinking water network

(2015) Joline El-Chakhtoura et al.   WATER RESEARCH

MiDAS: the field guide to the microbes of activated sludge

(2015) Simon Jon McIlroy et al.   Database-The Journal of Biological Databases and Curation

De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units

(2015) Sarah L. Westcott et al.   PeerJ

VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data

(2015) Cedric C Laczny et al.   Microbiome

Metagenomic Evidence for the Presence of Comammox Nitrospira -Like Bacteria in a Drinking Water System

(2015) Ameet J. Pinto et al.   mSphere

Next-Generation Sequencing: A Review of Technologies and Tools for Wound Microbiome Research

(2015) Brendan P. Hodkinson et al.   Advances in Wound Care

Probabilistic Models to Describe the Dynamics of Migrating Microbial Communities

(2015) Joanna L Schroeder et al.   PLoS One

Impact of Water Chemistry, Pipe Material and Stagnation on the Building Plumbing Microbiome

(2015) Pan Ji et al.   PLoS One

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

A comprehensive insight into bacterial virulence in drinking water using 454 pyrosequencing and Illumina high-throughput sequencing

(2014) Kailong Huang et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Microbial Community Response to Chlorine Conversion in a Chloraminated Drinking Water Distribution System

(2014) Hong Wang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Effect of Disinfectant, Water Age, and Pipe Materials on Bacterial and Eukaryotic Community Structure in Drinking Water Biofilm

(2014) Hong Wang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Differential Resistance of Drinking Water Bacterial Populations to Monochloramine Disinfection.

(2014) Tzu-Hsin Chiao et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Pyrosequencing Reveals Bacterial Communities in Unchlorinated Drinking Water Distribution System: An Integral Study of Bulk Water, Suspended Solids, Loose Deposits, and Pipe Wall Biofilm

(2014) G. Liu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Time between Collection and Storage Significantly Influences Bacterial Sequence Composition in Sputum Samples from Cystic Fibrosis Respiratory Infections

(2014) L. Cuthbertson et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Assessing microbiological water quality in drinking water distribution systems with disinfectant residual using flow cytometry

(2014) Simon Gillespie et al.   WATER RESEARCH

The bacteriological composition of biomass recovered by flushing an operational drinking water distribution system

(2014) I. Douterelo et al.   WATER RESEARCH

Abundance and composition of indigenous bacterial communities in a multi-step biofiltration-based drinking water treatment plant

(2014) Karin Lautenschlager et al.   WATER RESEARCH

Combining flow cytometry and 16S rRNA gene pyrosequencing: A promising approach for drinking water monitoring and characterization

(2014) E.I. Prest et al.   WATER RESEARCH

Spatial-Temporal Survey and Occupancy-Abundance Modeling To Predict Bacterial Community Dynamics in the Drinking Water Microbiome

(2014) A. J. Pinto et al.   mBio

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Meta-analyses of studies of the human microbiota

(2013) C. A. Lozupone et al.   GENOME RESEARCH

A meta-analysis of changes in bacterial and archaeal communities with time

(2013) Ashley Shade et al.   ISME Journal

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

A microbiology-based multi-parametric approach towards assessing biological stability in drinking water distribution networks

(2013) Karin Lautenschlager et al.   WATER RESEARCH

Diversity and dynamics of microbial communities at each step of treatment plant for potable water generation

(2013) Wenfang Lin et al.   WATER RESEARCH

Molecular analysis of point-of-use municipal drinking water microbiology

(2013) Eric P. Holinger et al.   WATER RESEARCH

Analysis of the bacterial communities associated with different drinking water treatment processes

(2013) Dan-Ning Zeng et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Metagenomic analysis reveals significant changes of microbial compositions and protective functions during drinking water treatment

(2013) Yuanqing Chao et al.   Scientific Reports

A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets

(2013) Omry Koren et al.   PLoS Computational Biology

Nontuberculous Mycobacteria, Fungi, and Opportunistic Pathogens in Unchlorinated Drinking Water in the Netherlands

(2012) Paul W. J. J. van der Wielen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomic Analyses of Drinking Water Receiving Different Disinfection Treatments

(2012) Vicente Gomez-Alvarez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Analysis of Structure and Composition of Bacterial Core Communities in Mature Drinking Water Biofilms and Bulk Water of a Citywide Network in Germany

(2012) Karsten Henne et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial Community Dynamics of an Urban Drinking Water Distribution System Subjected to Phases of Chloramination and Chlorination Treatments

(2012) Chiachi Hwang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

EvolView, an online tool for visualizing, annotating and managing phylogenetic trees

(2012) Huangkai Zhang et al.   NUCLEIC ACIDS RESEARCH

PCR Biases Distort Bacterial and Archaeal Community Structure in Pyrosequencing Datasets

(2012) Ameet J. Pinto et al.   PLoS One

Influence of hydraulic regimes on bacterial community structure and composition in an experimental drinking water distribution system

(2012) I. Douterelo et al.   WATER RESEARCH

Field guide to next-generation DNA sequencers

(2011) TRAVIS C. GLENN   Molecular Ecology Resources

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

(2011) Pelin Yilmaz et al.   NATURE BIOTECHNOLOGY

An in-premise model for Legionella exposure during showering events

(2011) Mary E. Schoen et al.   WATER RESEARCH

Concentration and Diversity of UnculturedLegionellaspp. in Two Unchlorinated Drinking Water Supplies with Different Concentrations of Natural Organic Matter

(2010) Bart A. Wullings et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing Analysis of Bacterial Biofilm Communities in Water Meters of a Drinking Water Distribution System

(2010) P.-Y. Hong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples

(2010) Christian L. Lauber et al.   FEMS MICROBIOLOGY LETTERS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial diversity in biofilms on water distribution pipes of different materials

(2010) J. Yu et al.   WATER SCIENCE AND TECHNOLOGY

Assessment of Bias Associated with Incomplete Extraction of Microbial DNA from Soil

(2009) L. M. Feinstein et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Nitrification in Drinking Water Systems

(2009) Yan Zhang et al.   CRITICAL REVIEWS IN ENVIRONMENTAL SCIENCE AND TECHNOLOGY

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Next-Generation DNA Sequencing Methods

(2008) Elaine R. Mardis   Annual Review of Genomics and Human Genetics