Network-based analysis of differentially expressed genes in cerebrospinal fluid (CSF) and blood reveals new candidate genes for multiple sclerosis

Identification of new key genes for type 1 diabetes through construction and analysis of protein-protein interaction networks based on blood and pancreatic islet transcriptomes

(2016) Nahid Safari-Alighiarloo et al.   Journal of Diabetes

Immune and Epstein-Barr virus gene expression in cerebrospinal fluid and peripheral blood mononuclear cells from patients with relapsing-remitting multiple sclerosis

(2015) Caterina Veroni et al.   Journal of Neuroinflammation

The role of epigenomics in the neurodegeneration of ataxia-telangiectasia

(2015) Jiali Li et al.   Epigenomics

MicroRNA-155 negatively affects blood–brain barrier function during neuroinflammation

(2014) Miguel Alejandro Lopez-Ramirez et al.   FASEB JOURNAL

The prediction of candidate genes for cervix related cancer through gene ontology and graph theoretical approach

(2014) V. Hindumathi et al.   Molecular BioSystems

Genetic Deletion of Mst1 Alters T Cell Function and Protects against Autoimmunity

(2014) Konstantin V. Salojin et al.   PLoS One

CDK inhibitors suppress Th17 and promote iTreg differentiation, and ameliorate experimental autoimmune encephalomyelitis in mice

(2013) Hideyuki Yoshida et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Analysis of schizophrenia and hepatocellular carcinoma genetic network with corresponding modularity and pathways: novel insights to the immune system

(2013) Kuo-Chuan Huang et al.   BMC GENOMICS

Network-based Analysis of Genome Wide Association Data Provides Novel Candidate Genes for Lipid and Lipoprotein Traits

(2013) Amitabh Sharma et al.   MOLECULAR & CELLULAR PROTEOMICS

Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data

(2012) Min Li et al.   BMC BIOINFORMATICS

The immunoproteasome in antigen processing and other immunological functions

(2012) Michael Basler et al.   CURRENT OPINION IN IMMUNOLOGY

Co-expression network with protein–protein interaction and transcription regulation in malaria parasite Plasmodium falciparum

(2012) Fu-Dong Yu et al.   GENE

Emerging roles of RB family: New defense mechanisms against tumor progression

(2012) Paola Indovina et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Cellular sources of dysregulated cytokines in relapsing-remitting multiple sclerosis

(2012) Jeppe Romme Christensen et al.   Journal of Neuroinflammation

Detecting overlapping protein complexes in protein-protein interaction networks

(2012) Tamás Nepusz et al.   NATURE METHODS

The Immunogenetic Architecture of Autoimmune Disease

(2012) A. Goris et al.   Cold Spring Harbor Perspectives in Biology

Construction and analysis of the protein-protein interaction networks for schizophrenia, bipolar disorder, and major depression

(2011) Sheng-An Lee et al.   BMC BIOINFORMATICS

The IntAct molecular interaction database in 2012

(2011) S. Kerrien et al.   NUCLEIC ACIDS RESEARCH

Role of HDAC3 on p53 Expression and Apoptosis in T Cells of Patients with Multiple Sclerosis

(2011) Fanglin Zhang et al.   PLoS One

Identifying Causal Genes and Dysregulated Pathways in Complex Diseases

(2011) Yoo-Ah Kim et al.   PLoS Computational Biology

Gene Expression: Protein Interaction Systems Network Modeling Identifies Transformation-Associated Molecules and Pathways in Ovarian Cancer

(2010) Sharmila A. Bapat et al.   CANCER RESEARCH

Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation

(2010) Daniele Merico et al.   PLoS One

Alternative splicing in multiple sclerosis and other autoimmune diseases

(2010) Irina Evsyukova et al.   RNA Biology

Preferential recruitment of interferon-γ-expressing TH17 cells in multiple sclerosis

(2009) Hania Kebir et al.   ANNALS OF NEUROLOGY

Regulation of macrophage activation and septic shock susceptibilityviap21(WAF1/CIP1)

(2009) Marianna Trakala et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Pathway and network-based analysis of genome-wide association studies in multiple sclerosis

(2009) S. E. Baranzini et al.   HUMAN MOLECULAR GENETICS

Finding the missing heritability of complex diseases

(2009) Teri A. Manolio et al.   NATURE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Gene expression profiling in multiple sclerosis: A disease of the central nervous system, but with relapses triggered in the periphery?

(2009) Boel Brynedal et al.   NEUROBIOLOGY OF DISEASE

CORUM: the comprehensive resource of mammalian protein complexes—2009

(2009) Andreas Ruepp et al.   NUCLEIC ACIDS RESEARCH

MINT, the molecular interaction database: 2009 update

(2009) Arnaud Ceol et al.   NUCLEIC ACIDS RESEARCH

The NF- B Family of Transcription Factors and Its Regulation

(2009) A. Oeckinghaus et al.   Cold Spring Harbor Perspectives in Biology

The immunogenetics of multiple sclerosis

(2008) Arne Svejgaard   IMMUNOGENETICS

The ins and outs of syntenin, a multifunctional intracellular adaptor protein

(2008) J. M. Beekman et al.   JOURNAL OF CELL SCIENCE

Environmental factors and multiple sclerosis

(2008) George C Ebers   LANCET NEUROLOGY

InnateDB: facilitating systems-level analyses of the mammalian innate immune response

(2008) David J Lynn et al.   Molecular Systems Biology

Integrated network analysis platform for protein-protein interactions

(2008) Jianmin Wu et al.   NATURE METHODS

Variations in the transcriptome of Alzheimer's disease reveal molecular networks involved in cardiovascular diseases

(2008) Monika Ray et al.   GENOME BIOLOGY