Diversity, taxonomic composition, and functional aspects of fungal communities in living, senesced, and fallen leaves at five sites across North America

Contributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota)

(2016) Jana M. U’Ren et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Estimating beta diversity for under-sampled communities using the variably weighted Odum dissimilarity index and OTUshuff

(2015) Daniel K. Manter et al.   BIOINFORMATICS

Phylogenetic analyses of eurotiomycetous endophytes reveal their close affinities to Chaetothyriales, Eurotiales, and a new order – Phaeomoniellales

(2015) Ko-Hsuan Chen et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Priority colonization of Cinnamomum camphora litter by endophytes affects decomposition rate, fungal community and microbial activities under field conditions

(2015) Yonghui Lin et al.   PEDOBIOLOGIA

Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees

(2015) Michaela Urbanová et al.   SOIL BIOLOGY & BIOCHEMISTRY

Genetic variation in horizontally transmitted fungal endophytes of pine needles reveals population structure in cryptic species

(2014) Ryoko Oono et al.   AMERICAN JOURNAL OF BOTANY

Relocation, high-latitude warming and host genetic identity shape the foliar fungal microbiome of poplars

(2014) Miklós Bálint et al.   MOLECULAR ECOLOGY

Tissue storage and primer selection influence pyrosequencing-based inferences of diversity and community composition of endolichenic and endophytic fungi

(2014) Jana M. U'Ren et al.   Molecular Ecology Resources

The Role of Endophytic Fungal Individuals and Communities in the Decomposition of Pinus massoniana Needle Litter

(2014) Zhilin Yuan et al.   PLoS One

Geographic locality greatly influences fungal endophyte communities in Cephalotaxus harringtonia

(2013) Aude Langenfeld et al.   Fungal Biology

Leaf-inhabiting endophytic fungi of European Beech (Fagus sylvatica L.) co-occur in leaf litter but are rare on decaying wood of the same host

(2013) Martin Unterseher et al.   FUNGAL DIVERSITY

Undersampling and the measurement of beta diversity

(2013) Jan Beck et al.   Methods in Ecology and Evolution

Host and geographic structure of endophytic and endolichenic fungi at a continental scale

(2012) Jana M. U'Ren et al.   AMERICAN JOURNAL OF BOTANY

Fungal community on decomposing leaf litter undergoes rapid successional changes

(2012) Jana Voříšková et al.   ISME Journal

Amplicon-pyrosequencing-based detection of compositional shifts in bryophyte-associated fungal communities along an elevation gradient

(2012) Marie L. Davey et al.   MOLECULAR ECOLOGY

Culture-based study of endophytes associated with rubber trees in Peru reveals a new class of Pezizomycotina: Xylonomycetes

(2012) R. Gazis et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Fungal community composition shifts along a leaf degradation gradient in a European beech forest

(2012) Derek Peršoh et al.   PLANT AND SOIL

Fungal endophyte communities reflect environmental structuring across a Hawaiian landscape

(2012) N. B. Zimmerman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Temporal dynamics of microbial communities on decomposing leaf litter of 10 plant species in relation to decomposition rate

(2012) Sarah R. Bray et al.   SOIL BIOLOGY & BIOCHEMISTRY

Hidden Fungi, Emergent Properties: Endophytes and Microbiomes

(2011) Andrea Porras-Alfaro et al.   Annual Review of Phytopathology

Diversity and decomposition potential of endophytes in leaves of a Cinnamomum camphora plantation in China

(2011) Xingbing He et al.   ECOLOGICAL RESEARCH

Exploring the evolutionary ecology of fungal endophytes in agricultural systems: using functional traits to reveal mechanisms in community processes

(2010) Megan Saunders et al.   Evolutionary Applications

Transformation of Quercus petraea litter: successive changes in litter chemistry are reflected in differential enzyme activity and changes in the microbial community composition

(2010) Jaroslav Šnajdr et al.   FEMS MICROBIOLOGY ECOLOGY

Colonization and lignin decomposition of pine needle litter by Lophodermium pinastri

(2010) T. Osono et al.   FOREST PATHOLOGY

From pattern to process: species and functional diversity in fungal endophytes of Abies beshanzuensis

(2010) Zhi-Lin Yuan et al.   Fungal Biology

Can leaf degrading enzymes provide evidence that endophytic fungi becoming saprobes?

(2010) Itthayakorn Promputtha et al.   FUNGAL DIVERSITY

Community composition of endophytic fungi in Acer truncatum and their role in decomposition

(2010) Xiang Sun et al.   FUNGAL DIVERSITY

Linking ex planta fungi with their endophytic stages: Perisporiopsis, a common leaf litter and soil fungus, is a frequent endophyte of Hevea spp. and other plants

(2010) Priscila Chaverri et al.   Fungal Ecology

Phylogenetic diversity and community structure of anaerobic gut fungi (phylum Neocallimastigomycota) in ruminant and non-ruminant herbivores

(2010) Audra S Liggenstoffer et al.   ISME Journal

Community Analysis Reveals Close Affinities Between Endophytic and Endolichenic Fungi in Mosses and Lichens

(2010) Jana M. U’Ren et al.   MICROBIAL ECOLOGY

Interwoven branches of the plant and fungal trees of life

(2010) A. E. Arnold et al.   NEW PHYTOLOGIST

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effects of prior decomposition of Camellia japonica leaf litter by an endophytic fungus on the subsequent decomposition by fungal colonizers

(2009) Takashi Osono et al.   MYCOSCIENCE

Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperateQuercus macrocarpaphyllosphere

(2009) A. Jumpponen et al.   NEW PHYTOLOGIST

Fungal endophytes: diversity and functional roles

(2009) R. J. Rodriguez et al.   NEW PHYTOLOGIST

ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences

(2009) Yijun Sun et al.   NUCLEIC ACIDS RESEARCH

A Phylogenetic Estimation of Trophic Transition Networks for Ascomycetous Fungi: Are Lichens Cradles of Symbiotrophic Fungal Diversification?

(2009) A. Elizabeth Arnold et al.   SYSTEMATIC BIOLOGY

Dilution-to-extinction cultivation of leaf-inhabiting endophytic fungi in beech (Fagus sylvatica L.) – Different cultivation techniques influence fungal biodiversity assessment

(2009) Martin Unterseher et al.  

Biogeographic and phylogenetic patterns in diversity of liverwort-associated endophytes

(2008) E. C. Davis et al.   AMERICAN JOURNAL OF BOTANY

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

Diversity and evolutionary origins of fungi associated with seeds of a neotropical pioneer tree: a case study for analysing fungal environmental samples

(2008) Jana M. U'Ren et al.