Estimating beta diversity for under-sampled communities using the variably weighted Odum dissimilarity index and OTUshuff

Soil and Rainfall Factors Influencing Yields of a Dryland Cropping System in Colorado

(2014) Lucretia A. Sherrod et al.   AGRONOMY JOURNAL

Bacterial community structures in rhizosphere microsites of ryegrass (Lolium perenne var. Nui) as revealed by pyrosequencing

(2014) Lorena M. Lagos et al.   BIOLOGY AND FERTILITY OF SOILS

Conditionally Rare Taxa Disproportionately Contribute to Temporal Changes in Microbial Diversity

(2014) A. Shade et al.   mBio

Undersampling and the measurement of beta diversity

(2013) Jan Beck et al.   Methods in Ecology and Evolution

Elevated Carbon Dioxide Alters the Structure of Soil Microbial Communities

(2012) Ye Deng et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Associating microbiome composition with environmental covariates using generalized UniFrac distances

(2012) Jun Chen et al.   BIOINFORMATICS

Effects of season and experimental warming on the bacterial community in a temperate mountain forest soil assessed by 16S rRNA gene pyrosequencing

(2012) Melanie Kuffner et al.   FEMS MICROBIOLOGY ECOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Digging deeper to find unique microbial communities: The strong effect of depth on the structure of bacterial and archaeal communities in soil

(2012) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

Measuring diversity: the importance of species similarity

(2011) Tom Leinster et al.   ECOLOGY

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing Reveals a Highly Diverse and Cultivar-Specific Bacterial Endophyte Community in Potato Roots

(2010) Daniel K. Manter et al.   MICROBIAL ECOLOGY

Microbial community resemblance methods differ in their ability to detect biologically relevant patterns

(2010) Justin Kuczynski et al.   NATURE METHODS

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evaluating different approaches that test whether microbial communities have the same structure

(2008) Patrick D Schloss   ISME Journal

Misidentification of the Bray-Curtis similarity index

(2008) PM Yoshioka   MARINE ECOLOGY PROGRESS SERIES

Identification of the Bray-Curtis similarity index: Comment on Yoshioka (2008)

(2008) PJ Somerfield   MARINE ECOLOGY PROGRESS SERIES

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

(2008) Micah Hamady et al.   NATURE METHODS